Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3749g00025 ATGGCCAGCGTAAGGAAGAAGCGGCAACGGAACACAGTCACAGTGACAGTGACGGGGGAACCCATTCCTCTCAAAGCAAACACAAATGCTGATGAGGAACACGCCGAGAACGGTGATGGAGGTTCCGAGACGGTGAAATTTGCTGAAAATGTTGGGTTATCGAACGGTGAAGGTTCGGGTAAAGTAAAAGACGATGATGGAGCAGGGGGTTCTTCTTGTGTTCAAGTTGTGACGGGAAAGAAGCGCGGCAGAAAGAGTAATGTGGGAAATGATAGTGTTTTGAAGAAGAGACCCGGTAGAAAAAGAAAGATCGTCAATAAAGATGGATCTAAGAGAGGTTCTGATGAACTGGTTAGTGGGAATAAGAGAGGTTTAGGGCGTAGGTTCAAGGCAGAGAATGAAGTTTTGGTGGCTCAGGGTCATGGTGAACCTGAAGTGCCTATTTATTCTTCAGGATATGCTTTTAGGGACCGTAAAAACAACGAACACGAGAAGCCCAAAGTCATCAAGAAATCTGTTAGAGACAAACGGTGGATTGAAGAGGAGTCCTTAATGTGCCATCAATGTCAGAGAAATGATAAAGGCAGGGTTGTGAGGTGCAAAAGTTGTAAGAGGAAAAGATTTTGCATACCCTGTTTAAATAATTGGTATCCTCAACTGAAAGAGGATGATATTGCTGAGGAATGTCCTGTCTGCCGTGGTAATTGCAATTGCAAAACGTGCTTGCGATCTGGTGAACTTATTGAAGAAATGAAAAAAGAAACGGAAACCAAAACAGATGAAAAGGTGGAGCTCCTTAAGTATTTGCTGAAAGGACTTCTTCCATATCTAAGACAGTTGGATGAAGAACAAATGATTGAGAAGGAGATAGAAGCTAAGAGACAAGGGCTCTCACTCTCAGAGCTAAATATAGAAAAGGCAGATTACTCCAAGGATGAGCGTGTATACTGTGACAATTGCAAAACATCAATATTTGATTACCACAGAAGCTGTACAAGATGCTCTTTTGATCTTTGTCTCATCTGTTGCCGTGAACTTAGAAGTGGGCAGCTTCTAGGCGGTGCAGAGCCAATTGATTTGGAGTTTGTATTCCGAGGTCGTGGTTATTTGCATGCAGAGGAAGAAAATAAGAAGGTACAAAGAAATGCATTACAAGCTAATGTTAAGCCTGAGAATCGTACGTGGTCAAGGTCTGAATGGCATGCAGAAAGTGATGGTAGCATTCTTTGTCCAAAAGTTAACGATGCATGCGTCCACAGTTTTCTTGAACTGAGAAGCATATTTCATCCAAATTTTATCTCAGACTTAGTATGTAAAGCAGGAGAATTAGCAAAAGCATATAAGCTTCAAGAAGCAATTGAGACTCCTCCCAAGTGGTGTTCATGTTTGAAGCTTGGTAGAGACACAGATGTTAGATATAATTATATGAGGAAGGCAGCGTCGCGTGAAGATTCCAGTGACAACTGTTTATACTGTCCTAGGGCTGTAGATCTACAGCATGGGGATTCAAGGCATTTTCAATGGCATTGGTACAGAGGGGAGCCTGTCATTGTTAGCAATGTACTTGAATGTACGTCTGGTTTGAGCTGGGAACCACTTGTCATGTGGCGTGCATTCCGTGAGAGAAGCACCAAGCAGGATCAACTTTTCGATGTGAAGGCAATTGATTGCTTAGATTGGTGTGAGGGAGAGATTAATATACATCAATTCTTTACTGGGTATACAAGTGGTCGTAAGGATTGGCTTAATTGGCCTCAGATATTGAAATTAAAAGATTGGCCTCCTTCTAATTTTTTTGAGAAATGTTTACCTCGTCATTGTGCTGAGTTCCTATCTTCCTTGCCCTATAAAGAATATACGGATCCTCTTAGAGGTGTTCTTAACCTCGCAGTGAAGTTGCCAAAAGGATGTCTAAAGCCTGACATGGGGCCAAAGACATATATTGCTTATGGATTTGCTCAGGAGCTTGGGCGTGGTGATTCTGTTACTAAGCTCCACTGTGATATGTCTGATGCAGTAAATGTGTTGACTCACATAGCTGAAGTGAAATTGGATTCTGAGCAACTTACTACCATTGAGAATTTGACACAAAAGCATCTTGAGCAAGACAAGAGGGAACTACTTGGTGATGGGAAAGTGGTTGATCAATTTCATCAACACTCTGATTGGAATGAGCAAGAAAACGGTATATTGGTTGCGGGGGATGCTTCAGAAGGTGCTCTCTGGGATATTTTTCGTAGACAGGATGTACCTAAATTGCAGGAATATCTGATGAAGCATTTCAGAGAGTTCAGGCATGTCCATTGCAGTCCTCTAAAACGGGTTATTCACCCCATCCATGATCAGACTTTCTATCTGACTGTGGAGCATAAGAGGAAGCTTAAGGAGGAATATGGAATTGAGCCCTGGACTTTTATTCAGAAGCTAGGAGATGCTGTTTTTATTCCAGCAGGTTGTCCTCACCAAGTCAGAAATCTGAAGTCATGCATTAAAGTTGCGCTTGATTTTGTCTCTCCTGAAAATGTTGGTGAGTGCTTCCGTTTGACAGAGGAATTCCGCATGCTTCCAATAAATCACTGGTCCACTGAGGACAAACTGGAGGTGAAGAAAATGACGATACATGCTCTGATTGATGTGGTGGGACAATTGGAGCAAGCAAGGTTTGGGGAAACCAAGGTTCCACTATGA 2688 0.4237 MASVRKKRQRNTVTVTVTGEPIPLKANTNADEEHAENGDGGSETVKFAENVGLSNGEGSGKVKDDDGAGGSSCVQVVTGKKRGRKSNVGNDSVLKKRPGRKRKIVNKDGSKRGSDELVSGNKRGLGRRFKAENEVLVAQGHGEPEVPIYSSGYAFRDRKNNEHEKPKVIKKSVRDKRWIEEESLMCHQCQRNDKGRVVRCKSCKRKRFCIPCLNNWYPQLKEDDIAEECPVCRGNCNCKTCLRSGELIEEMKKETETKTDEKVELLKYLLKGLLPYLRQLDEEQMIEKEIEAKRQGLSLSELNIEKADYSKDERVYCDNCKTSIFDYHRSCTRCSFDLCLICCRELRSGQLLGGAEPIDLEFVFRGRGYLHAEEENKKVQRNALQANVKPENRTWSRSEWHAESDGSILCPKVNDACVHSFLELRSIFHPNFISDLVCKAGELAKAYKLQEAIETPPKWCSCLKLGRDTDVRYNYMRKAASREDSSDNCLYCPRAVDLQHGDSRHFQWHWYRGEPVIVSNVLECTSGLSWEPLVMWRAFRERSTKQDQLFDVKAIDCLDWCEGEINIHQFFTGYTSGRKDWLNWPQILKLKDWPPSNFFEKCLPRHCAEFLSSLPYKEYTDPLRGVLNLAVKLPKGCLKPDMGPKTYIAYGFAQELGRGDSVTKLHCDMSDAVNVLTHIAEVKLDSEQLTTIENLTQKHLEQDKRELLGDGKVVDQFHQHSDWNEQENGILVAGDASEGALWDIFRRQDVPKLQEYLMKHFREFRHVHCSPLKRVIHPIHDQTFYLTVEHKRKLKEEYGIEPWTFIQKLGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGECFRLTEEFRMLPINHWSTEDKLEVKKMTIHALIDVVGQLEQARFGETKVPL 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3749g00025 895 Pfam JmjC domain, hydroxylase 740 836 IPR003347 -
Gabi3749g00025 895 ProSiteProfiles JmjC domain profile. 622 853 IPR003347 -
Gabi3749g00025 895 ProSiteProfiles Zinc finger RING-type profile. 186 233 IPR001841 -
Gabi3749g00025 895 Gene3D Cupin 489 861 - -
Gabi3749g00025 895 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 181 246 IPR018866 -
Gabi3749g00025 895 FunFam Transcription factor jumonji domain-containing protein 487 862 - -
Gabi3749g00025 895 MobiDBLite consensus disorder prediction 1 23 - -
Gabi3749g00025 895 SUPERFAMILY Clavaminate synthase-like 494 876 - -
Gabi3749g00025 895 MobiDBLite consensus disorder prediction 1 121 - -
Gabi3749g00025 895 SMART cupin_9 603 853 IPR003347 -
Gabi3749g00025 895 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 84 886 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3749g00025 Gabi-Chr3749 275824 284811 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gabi3749g00025 JmjC 9.6e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3749g00025 K15601 - gmx:100805723 1142.87