Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3749g00016 ATGGCGACCACACTGACTTGGAGGTTCGCTGGCAATAATGGCAGCAGCCTTGCTGCTAATGATTTGGAAAGAAATGGTGACGGGAAGGCTCAAGATATAGAGCCTCCAACTCCCCATTCTGTTCTGAAGATGGGATTGAGAGAACGTAGCAGCAGCAGCAGCATGGAAGATCCAGATGGGACATTAGCAAGTGTTGCCCAATGCATTGAGCAGCTGCGTCAGAGCTCATCTTCTGTGCAAGAGAAAGAGTATTCCTTGAAACAGTTGTTGGAGCTTATTGATATGCGGGAAAATGCTTTCAGTGCTGTTGGATCTCACTCTCAGGCAGTTCCAGTTCTTGTTTCCCTTCTCCGGTCAGGGTCACTGAATGTGAAGATACAGGCAGCAACTGTCTTGGGCTCCCTTTGTAAAGAAAATGAGCTGAGGGTGAAAGTCTTGCTTGGAGGATGCATTCCTCCTTTGCTTGGTCTACTCAAGTCCAGTTCAGCCGAAGGTCAAGTAGCTGCTGCAAAGACTATTTTTGCTGTCTCTCAAGGTGGGGCCAAAGATCATGTTGGATCAAAAATTTTTTCAACTGAAGGAGTTGTTCCAGTGCTCTGGGAGCAGCTGCAAAAGGGCCTGAAGACTGGAAATGTAGTCGATAGTTTATTGACTGGAGCATTGAAAAATCTCTCCAGCAGTACTGAAGGATTCTGGAATGCCACAATACAAGCTGGAGGAGTGGACATATTAGTGAAGTTACTGACAGCAGGACAGTCTAGCACTTTAGCTAATGTGTGCTTTCTACTTGCCTGTATGATGATGGAGGATGCATCTGTTTGTTCAAAGGTGTTGACAGCAGAGGCAACAAAACAACTCCTCAAACTATTAGGCCCGGGTAATGATGCCCCTGTTAGAGCTGAAGCAGCCGGTGCTCTTAAATCTCTATCTGCCCAGTGCAAAGATGCAAGGAAAGAGATAGCCAACTCTAATGGCATTCCTGCTTTGATCAATGCTACCATAGCTCCTTCCAAAGAGTTCATGCAAGGTGAGTATGCTCAAGCATTACAGGAGAATGCTATGTGTGCTCTAGCAAACATCTCTGGTGGTTTGTCTTATGTCATCTCCAGCCTTGGTCAAAGCCTTGAATCATGCTCCTCACCTACTCAAACTGCTGACACATTGGGGGCTTTAGCTTCAGCTCTTATGATATATGATGACAAGGCGGAATCTACTAGAGCGTCAGATCCTTTGGTAGTTGAGCAAGCATTACTCAAACAATTTAAACCTCACTTGTCCTTCCTTGTGCAGGAACGGACTATTGAAGCCCTAGCTAGTTTGTATGGCAATCCTATACTCTCAATTAAACTTGCAAATTCTGATGAAAAGCATTTGCTTGTTGGTTTAATAACAATGGCTGCCAACGAAGTGCAAGAGGAGCTTCTAAAAGCTCTCTTAACATTGTGCAATAGTGAATGCAGTCTATGGCGTGCACTTCAAGGCCGTGAAGGAGTTCAGCTGTTGATATCTCTTCTGGGTCTTTCATCTGAACAGCAGCAAGAATGTGCTGTTGCTTTGCTTTGCCTTCTATCTAATGAAAATGATGAAAGTAAATGGGCCATTACTGCTGCTGGTGGTATACCTCCACTTGTTCAAATTTTAGAGTCAGGATCAGCAAAAGCAAAGGAAGACTCAGCAACAATTCTTAGGAACCTATGCAATCACAGTGAGGATATACGTGCTTGTGTTGAAAGTGCTGATGCTGTTCCTGCATTGTTGTGGCTATTGAAGAATGGAAGCCCAAATGGGAAGGAGATTGCGGCAAAGACCTTGAATCACCTAATTCATAAATCTGATACCGCAACTATCAGTCAGCTTACAGCATTATTAACTAGTGATCTACCTGAATCCAAGGTTTATGTTTTAGATGCTTTGAGGAGTATGCTTTCTGTTGTTGCTCTTAGTGATATTCTACGTGAAGGTAGTGCTGCCAGTGATGCAATTGATACAATGATAAAAATATTGAGCTCAACTAAGGAAGAAACTCAAGCAAAGTCTGCATCAGCTCTGGCGGGAATTTTCGAAATGAGGAAAGATGTGCGTGAAAGCAGCATTGCTGTTAAAACACTTTTGTCAGCCATGAAGTTGCTTAATGTGGAATCTGAAAGTATCTTAATGGAGTCCTCGCGTTGCCTGGCTGCAATATTTCTTTCCATCAAAGAGAACAGGGATGTAGCTGCAATTGCTAGAGATGCATTATCACCCCTAGTAGCACTAGCTAACTCTTCAGTTCTGGAAGTGGCAGAGCTGGCAACATGTGCTGTGGCAAATCTTATTTTGGACAGTGAAATTTCTGATAAAGCTGTTGCAGAAGAAGTTATATTGCCTGCTACCAGAGTATTACGTGAAGGCACAATTTCAGGAAAAACACATGCGGCAGCGGCAATTGCTCGCCTCTTACATTCTAGGCAAGTTGATTATGCTGTAACCACTTGTGTGAATCGTGCTGGTACTGTTCTTGCATTAGTTTCTTTCTTAGATTCTGCTATTAATGGACCTGTATCCATATCAGAGGCTCTAGAAGCACTTGCCATTCTGTCCAGGTCTGAAGAGACCAGTGCACATAGTAAACCTGCATGGGCAGTTTTGGCTGAATTCCCTAAAAGCATAAGCCCAATAGTCCTGTCTATTGCTGATTCAACGCCACTGTTGCAGGATAAAGCTATTGAGATATTATCTCGATTATGCAAGGATCAGCCTGTAGTTTTAGGAGACACTGTAGCTACTGCTTCTGGATGTATATCTTCAATAGCTAAGAGAATAATCAATTCCACTTCCCCAAATTTAAAGGTCAAAATTGGGGGAGCTGCAGTTCTTATTTGTGCTGCTAAAGTAAATCATCAGAGGCTGGTGGAGGATCTCAATTTATCTAACTTGTGTGCTGATCTTGTTCAGTCTCTTGTTGGTATGGTTATTTCTTCACAGGCTTCTATGGCCAATCAGGGTGATGACAACAAGGAAGTCATTAGCATTTGCAGGAATATGAAAGAGGAAGCCAATGAAGGCAAATCCAGCACTGGCACTGCCATTATATCTGGTGCCGACTTACCTATATGGTTACTGTCTGTTCTAGCTTGCCATGATGAGAAAAGTAAAATTGCAATAATGGAGGCTGGAGCAATTGAGGTTCTCACGGACAGGATCGCAAATTGTTTCTCACAATATAGTCAGATTGACTATAAAGAAGATAACAGCATGTGGATTTGTGCTTTGTTGTTGGCAATATTATTTCAAGATAGAGATATCATACGAGCACATGCAACCATGAAATCGATACCAGCCCTTGCCAATTTACTGAAGTCAGAGGAATCAGCAAACAAATATTTTGCTGCACAATCAATAGCCAGCCTAGTCTGTAATGGTAGCAGGGGAACACTTTTGTCTGTGGCAAATTCTGGGGCAGCAGGTGGACTTATTTCCTTACTCGGCTGTGCTGATTCTGATATAGAGGATCTTCTGGAATTGTCGGAGGAATTTTCTTTGGTGCGTTATCCTGATCAAGTTGCTCTTGAGAGGTTGTTTAGAGTTGATGACATAAGGGTTGGTGCCACTTCTCGGAAGGCAATACCTGCCCTTGTTGATCTGCTCAAACCAATTCCTGATCGACCAGGAGCACCATTTTTATCACTTGGGCTTTTGACTCATCTTGCTAGAGATTGTCCATCGAATACGATTGTAATGGTAGAGTCTGGGGCCTTAGAGGCACTTACTAAGTATCTTTCACTTGGTCCACAAGATGCAACTGAAGAAGCTGCTACGGATCTGTTAGGAATTCTTTTTAGCAGTGCTGAGATACGGAGACATGAGTCAGCATTTGGTGCTGTTACTCAACTTGTAGCTGTCCTACGATTAGGAGGAAGAGCTGCAAGGCGTAGTGCTGCAAAAGCCTTGGAAAGTTTATTCTCTGCTGATCATATTAGAAATGCAGAAGCTGCTCGGCAAGCTGTTCAACCCTTGGTGGAGATTCTTAATACTGGTTTAGAGAGAGAGCAGCATGCTGCAATTGCTGCATTAGTTAGGTTATTGAGTGAAAATCCTTCAAAAGCACTTGCTGTTGCAGATGTTGAGATGAATGCAGTGGATGTTCTTTGCAGGATCCTTTCATCAGATTGTTCAATGGACCTCAAAGGGGATGCTGCTGAACTATGTAGTGTTCTTTTTGGAAATACAAGGATTCGGTCTACGATGGCTGCTGCACGCTGTGTTGAACCTCTGGTCTCTCTCCTTGTAACTGAGTTTAGTCCAGCTCAGCATTCAATTGTCCGGGCATTGGATAGGCTTGTTGATGATGAGCAACTGGCTGAATTAGTTGCTGCACATGGTGCGGTAATTCCTCTTGTTGGCCTACTGTATGGGGGGAACTATGTACTTCATGAGGCCATTTCTAGAGCTCTGGTCAAGTTAGGAAAAGACAGACCTGCTTGTAAAGTGGAAATGGTGAAAGCTGGAGTCATAGAAAGCATACTTGACATCCTTCATGAAGCACCTGATTATCTTTGTGCAGCTTTTGCAGAATTGTTGCGTATATTGACCAATAATGCTAGCATAGCCAAAGGACCATCAGCTGCTAAAGTGGTTGAACCCCTATTTTTGTTGCTGACAAGACAAGAGTTTGGGCCTGATGGACAACATAGTGCATTGCAGGTTTTGGTTAATATCTTAGAACATCCACAGTGTCGTGTGGATTACACATTGACTTCTCACCAAGCTATTGAGCCACTTATCCCCTTGCTTGATTCTCCAATTTCAGCAGTGCAACAGTTGGCTGCTGAGCTTCTCTCGCATCTACTTTTAGAAGAACACCTTCAGAAGGATCCAGTGACACAGCAAGTAATTGGCCCTCTTATACGAGTTCTTGGCTCTGGTATACAGATATTGCAGCAGAGAGCTGTAAAGGCCCTAGTCAGTATTGCCCTGATATGGCCAAATGAAATCGCAAAGGAGGGTGGTGTTATTGAAATTTCCAAAGTGATATTGCAAGCCGATCCTTCCATTCCTCATGCTTTATGGGAGTCTGCTGCTTCTGTTTTGTCAAGTATCCTGCAATTTAGTTCTGAATTCTACTTGGAAGTTCCTGTTGCTGTTTTGGTAAGGTTGCTTCGATCTGGCTCAGAGAGCACTGTTGTTGGTGCGTTAAATGCTCTTCTTGTATTGGAAAGTGATGATGGAACTAGTGCAGAAGCAATGGCTGAAAGTGGTGCTATAGAGGCTCTCTTGGAGCTCCTAAGATATCATCAGTGTGAGGAAACTGCTGCAAGACTTTTAGAAGTATTGCTGAACAATGTCAAGATCAGAGAAACAAAAGTTACTAAATCAGCCATCTTACCCTTATCCCAGTACCTCTTAGACCCACAAACCCAAGCACAACAAGCAAGGTTATTAGCAACTTTGGCTCTTGGTGATCTGTTCCAGAATGAGGGTCTTGCTCGGACATCTGATGCTGTTTCAGCTTGTCGTGCTTTAGTGAATGTGCTTGAAGACCAACCAACTGAAGAAATGAAAGTTGTAGCCATTTGTGCACTGCAAAACCTCGTGATGTACAGTCGATCTAATAAAAGAGCAGTTGCGGAGGCTGGTGGTGTTCAGGTTGTACTAGATCTGATTGGTTCAAGTGATCCTGAAACCTCTGTTCAGGCTGCAATGTTTATTAAACTTCTCTTTTCAAATCATACTATTCAAGAGTATGCTTCTAGTGAAACAGTCAGAGCTATAACTGCTGCCATTGAAAAGGATTTATGGGCTACTGGAACTGTGAACGATGAGTATCTTAAAGCCTTAAATTCTCTATTTAGCAACTTCCCACGACTTAGAGCAACAGAACCAGCAACACTGAGCATTCCTCATCTGGTTTCGTCCTTAAAGACAGGCTCAGAGGCTACCCAGGAAGCTGCCTTGGATGCACTTTTTCTGCTCAGGCAAGCTTGGTCAGCATGCCCCGCAGAAGTTTCAAGAGCTCAGTCCATAACAGCTGCAGATGCTATTCCTTTGTTGCAGTACTTAATCCAGTCTGGCCCACCTCGGTTTCAGGAGAAGGCAGAATTTTTACTGCAGTGTTTGCCAGGGACATTGGTGGTGATCATCAAGCGTGGTAATAATATGAAGCAGTCTGTTGGAAACCCAAGTGTTTATTGTAAGCTTACACTTGGAAACACTCCTCCAAGGCAAACCAAGGTGGTCTCAACTGGCCCTAATCCGGATTGGGATGAGAGCTTTTCATGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAGCTTCATATTTCTTGCAAAAATAAAAGCAAAATGGGAAAGAGTTCATTTGGGAAAGTGACAATCCAGATTGATCGGGTGGTAATGCTGGGAGCAGTGTCTGGAGAGTACACTCTGTTGCCGGAAAGTAAAAGTGGTCCCTCAAGGAATTTAGAAATAGAATTTCAATGGTCGAACAAGTGA 6468 0.4343 MATTLTWRFAGNNGSSLAANDLERNGDGKAQDIEPPTPHSVLKMGLRERSSSSSMEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLKQLLELIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQVAAAKTIFAVSQGGAKDHVGSKIFSTEGVVPVLWEQLQKGLKTGNVVDSLLTGALKNLSSSTEGFWNATIQAGGVDILVKLLTAGQSSTLANVCFLLACMMMEDASVCSKVLTAEATKQLLKLLGPGNDAPVRAEAAGALKSLSAQCKDARKEIANSNGIPALINATIAPSKEFMQGEYAQALQENAMCALANISGGLSYVISSLGQSLESCSSPTQTADTLGALASALMIYDDKAESTRASDPLVVEQALLKQFKPHLSFLVQERTIEALASLYGNPILSIKLANSDEKHLLVGLITMAANEVQEELLKALLTLCNSECSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILESGSAKAKEDSATILRNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSVVALSDILREGSAASDAIDTMIKILSSTKEETQAKSASALAGIFEMRKDVRESSIAVKTLLSAMKLLNVESESILMESSRCLAAIFLSIKENRDVAAIARDALSPLVALANSSVLEVAELATCAVANLILDSEISDKAVAEEVILPATRVLREGTISGKTHAAAAIARLLHSRQVDYAVTTCVNRAGTVLALVSFLDSAINGPVSISEALEALAILSRSEETSAHSKPAWAVLAEFPKSISPIVLSIADSTPLLQDKAIEILSRLCKDQPVVLGDTVATASGCISSIAKRIINSTSPNLKVKIGGAAVLICAAKVNHQRLVEDLNLSNLCADLVQSLVGMVISSQASMANQGDDNKEVISICRNMKEEANEGKSSTGTAIISGADLPIWLLSVLACHDEKSKIAIMEAGAIEVLTDRIANCFSQYSQIDYKEDNSMWICALLLAILFQDRDIIRAHATMKSIPALANLLKSEESANKYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADSDIEDLLELSEEFSLVRYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLSLGLLTHLARDCPSNTIVMVESGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFGAVTQLVAVLRLGGRAARRSAAKALESLFSADHIRNAEAARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSKALAVADVEMNAVDVLCRILSSDCSMDLKGDAAELCSVLFGNTRIRSTMAAARCVEPLVSLLVTEFSPAQHSIVRALDRLVDDEQLAELVAAHGAVIPLVGLLYGGNYVLHEAISRALVKLGKDRPACKVEMVKAGVIESILDILHEAPDYLCAAFAELLRILTNNASIAKGPSAAKVVEPLFLLLTRQEFGPDGQHSALQVLVNILEHPQCRVDYTLTSHQAIEPLIPLLDSPISAVQQLAAELLSHLLLEEHLQKDPVTQQVIGPLIRVLGSGIQILQQRAVKALVSIALIWPNEIAKEGGVIEISKVILQADPSIPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSESTVVGALNALLVLESDDGTSAEAMAESGAIEALLELLRYHQCEETAARLLEVLLNNVKIRETKVTKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARTSDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGTVNDEYLKALNSLFSNFPRLRATEPATLSIPHLVSSLKTGSEATQEAALDALFLLRQAWSACPAEVSRAQSITAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKVVSTGPNPDWDESFSWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKSGPSRNLEIEFQWSNK 2155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3749g00016 2155 Pfam C2 domain 2034 2130 IPR000008 -
Gabi3749g00016 2155 SMART arm_5 819 861 IPR000225 GO:0005515
Gabi3749g00016 2155 SMART arm_5 138 178 IPR000225 GO:0005515
Gabi3749g00016 2155 SMART arm_5 1402 1442 IPR000225 GO:0005515
Gabi3749g00016 2155 SMART arm_5 1570 1611 IPR000225 GO:0005515
Gabi3749g00016 2155 SMART arm_5 96 137 IPR000225 GO:0005515
Gabi3749g00016 2155 SMART arm_5 569 609 IPR000225 GO:0005515
Gabi3749g00016 2155 SMART arm_5 313 362 IPR000225 GO:0005515
Gabi3749g00016 2155 SMART arm_5 1443 1483 IPR000225 GO:0005515
Gabi3749g00016 2155 SMART arm_5 1315 1356 IPR000225 GO:0005515
Gabi3749g00016 2155 SMART arm_5 527 567 IPR000225 GO:0005515
Gabi3749g00016 2155 SMART arm_5 1485 1525 IPR000225 GO:0005515
Gabi3749g00016 2155 SMART arm_5 735 773 IPR000225 GO:0005515
Gabi3749g00016 2155 SMART arm_5 1233 1274 IPR000225 GO:0005515
Gabi3749g00016 2155 SMART arm_5 1861 1901 IPR000225 GO:0005515
Gabi3749g00016 2155 SMART arm_5 270 311 IPR000225 GO:0005515
Gabi3749g00016 2155 SMART arm_5 1734 1773 IPR000225 GO:0005515
Gabi3749g00016 2155 CDD C2 2036 2126 - -
Gabi3749g00016 2155 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1200 1244 IPR000225 GO:0005515
Gabi3749g00016 2155 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 29 2155 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Gabi3749g00016 2155 SUPERFAMILY ARM repeat 1032 1162 IPR016024 -
Gabi3749g00016 2155 SMART C2_3c 2035 2131 IPR000008 -
Gabi3749g00016 2155 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2033 2152 IPR035892 -
Gabi3749g00016 2155 Gene3D - 655 877 IPR011989 -
Gabi3749g00016 2155 Gene3D - 409 654 IPR011989 -
Gabi3749g00016 2155 Gene3D - 44 408 IPR011989 -
Gabi3749g00016 2155 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1384 1618 - -
Gabi3749g00016 2155 SUPERFAMILY ARM repeat 347 688 IPR016024 -
Gabi3749g00016 2155 SUPERFAMILY ARM repeat 1190 1572 IPR016024 -
Gabi3749g00016 2155 ProSiteProfiles C2 domain profile. 2015 2132 IPR000008 -
Gabi3749g00016 2155 SUPERFAMILY ARM repeat 661 965 IPR016024 -
Gabi3749g00016 2155 Coils Coil 299 319 - -
Gabi3749g00016 2155 Pfam Armadillo/beta-catenin-like repeat 106 136 IPR000225 GO:0005515
Gabi3749g00016 2155 Pfam Armadillo/beta-catenin-like repeat 527 566 IPR000225 GO:0005515
Gabi3749g00016 2155 SUPERFAMILY ARM repeat 66 395 IPR016024 -
Gabi3749g00016 2155 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 538 580 IPR000225 GO:0005515
Gabi3749g00016 2155 Gene3D - 881 1175 IPR011989 -
Gabi3749g00016 2155 Gene3D - 1656 2033 IPR011989 -
Gabi3749g00016 2155 FunFam Coatomer beta subunit 1620 2033 - -
Gabi3749g00016 2155 Gene3D - 1181 1391 IPR011989 -
Gabi3749g00016 2155 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 2034 2155 - -
Gabi3749g00016 2155 Gene3D C2 domain 2034 2155 IPR035892 -
Gabi3749g00016 2155 SUPERFAMILY ARM repeat 1584 2032 IPR016024 -
Gabi3749g00016 2155 Gene3D - 1392 1622 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3749g00016 Gabi-Chr3749 202196 212878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3749g00016 490 622 U-box Gene Family AT2G23140 40.741 4.63e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3749g00016 - - gmx:100816765 3764.16