Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3749g00009 ATGAGAGAGATCTCTAAGCTATTTCATCAGCTTTGTGGGAAAATCATACTCTTATTGGCATGCCTCCTAATAGAACTTATTGTCCTTATTAGGAAATTAACAACAGAGGATACAAGTCCAATTACCACTGAGCAATACCTCAAATTCATTGAAGAGAAGAACCCCACGATTTGTTACACCAAAGGGTTGAGGACAGAGCATGTGGAGTGTAGGGTATGCTTATCCGAATTTGAGGAAGGCGACAAGGTGAGGAACTTGAAATGCAAACACACATTTCACAAAGATTGCTTGGACAAGTGGTTGTTAGAATATTGGGCTACGTGTCCACTTTGTAGGAAAAAAGTGTTGCCAGATGCTGTTGTGTCCAAACATCGTCAGCTTCTGAATCAGGTAGATTTCAATGGGAATGATGAGCAACCTCCCTTTCTGTTATCCGTATTACGTGGTGATTTCCATGGGAATCGAAACTTGTCTTCAAGATATTCTTAA 489 0.4029 MREISKLFHQLCGKIILLLACLLIELIVLIRKLTTEDTSPITTEQYLKFIEEKNPTICYTKGLRTEHVECRVCLSEFEEGDKVRNLKCKHTFHKDCLDKWLLEYWATCPLCRKKVLPDAVVSKHRQLLNQVDFNGNDEQPPFLLSVLRGDFHGNRNLSSRYS 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3749g00009 162 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
Gabi3749g00009 162 SMART ring_2 70 111 IPR001841 -
Gabi3749g00009 162 FunFam Putative RING zinc finger domain superfamily protein 42 117 - -
Gabi3749g00009 162 SUPERFAMILY RING/U-box 48 118 - -
Gabi3749g00009 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 117 IPR013083 -
Gabi3749g00009 162 PANTHER - 1 150 - -
Gabi3749g00009 162 Pfam Ring finger domain 69 112 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3749g00009 Gabi-Chr3749 103283 103774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3749g00009 69 126 C3H Transcription Factor Family AT1G15100 50.000 3.74e-16 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3749g00009 K16282 - gmx:102661897 191.815