Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3749g00005 ATGAATTCACCAACTGCACAGTTCGCAAGGATGGGTGTGTACGATCCTCTCCACCAGATTAGTATGTGGGGAGAAAGCTTCAAAAGTAATGGTGATTTAAGTGCATCCATGCCCTTAATTGATGAGGCAGACATGAAGTTCGATAGTCAGTCAGAGGATGCTTCTCATGGTATGCTGGGAACATCTAACAAGTATGACCAAGAAGCTAATAGACCTACTGATAAGATGCTGAGACGTCTTGCGCAAAATCGAGAAGCTGCTCGTAAGAGCCGTTTGCGGAAAAAGGCCTATGTGCAGCAGTTAGAATCAAGTCGTTTGAAGTTGATGCAGTTGGAGCAAGAGCTTGAACGTGCAAGACAGCAGGGACTGTATGTAGGTGGTGGCTTGGATTCTGATCATCTGGGTTTTGCTGGACCTGTAAATTCAGGAATTACAACCTTTGAGATGGAGTATGGACACTGGGTGGAAGAGCAAAATAGGCAAATCTTAGAACTGAGAAGTGCTTTAAATTCTCATATTGGTGACATAGAGCTCAGGATACTGGTAGATGGTATTATGAACCACTATGCTGAAATCTTTCGCATGAAATCTGCAGCTGCAAAAGCTGATGTCTTCTATTTGATGTCCGGTATGTGGAAAACAACAGCGGAAAGATTTTTCTTGTGGATTGGCGGCTTTCGCCCCTCTGAGCTTCTAAAGGTTCTTGTTCCTCTGATTGAACCCTTGACGGAGCAACAACGGTTGGATGTCTATAACCTTACACAATCATGTCAGCAAGCAGAAGATGCCCTTTCACAAGGTATGGACAAACTCCGGCAAGCACTCGCTGATAGTGTAGCAGCTGGACAACTCGTTGAAGGAAGTTATATTCCGCAGATGGCTTCTGCAATGGAGAACTTGGAAGCTCTGGCGAGCTTTTTGATCGAGGCTGATCATCTTCGTCATGAAACCTTGAAGCAAATGTCTCGAATACTTACAATCCGTCAGGCAGCTCGGTGCTTGCTTGCCTTGGGGGAATATTTCCAACGCCTGAGGGCTTTAAGCTCACTATGGTCTAATCGACCCTGTGAACCTGCTTAG 1080 0.4528 MNSPTAQFARMGVYDPLHQISMWGESFKSNGDLSASMPLIDEADMKFDSQSEDASHGMLGTSNKYDQEANRPTDKMLRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELERARQQGLYVGGGLDSDHLGFAGPVNSGITTFEMEYGHWVEEQNRQILELRSALNSHIGDIELRILVDGIMNHYAEIFRMKSAAAKADVFYLMSGMWKTTAERFFLWIGGFRPSELLKVLVPLIEPLTEQQRLDVYNLTQSCQQAEDALSQGMDKLRQALADSVAAGQLVEGSYIPQMASAMENLEALASFLIEADHLRHETLKQMSRILTIRQAARCLLALGEYFQRLRALSSLWSNRPCEPA 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3749g00005 359 CDD bZIP_HBP1b-like 75 127 - -
Gabi3749g00005 359 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 78 93 IPR004827 GO:0003700|GO:0006355
Gabi3749g00005 359 ProSiteProfiles DOG1 domain profile. 144 354 IPR025422 GO:0006351|GO:0043565
Gabi3749g00005 359 Pfam bZIP transcription factor 74 109 IPR004827 GO:0003700|GO:0006355
Gabi3749g00005 359 Coils Coil 94 121 - -
Gabi3749g00005 359 SMART brlzneu 71 142 IPR004827 GO:0003700|GO:0006355
Gabi3749g00005 359 SUPERFAMILY Leucine zipper domain 75 116 IPR046347 GO:0003700|GO:0006355
Gabi3749g00005 359 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 73 117 IPR004827 GO:0003700|GO:0006355
Gabi3749g00005 359 Gene3D - 74 123 - -
Gabi3749g00005 359 FunFam BZIP family transcription factor 74 123 - -
Gabi3749g00005 359 Pfam Seed dormancy control 162 236 IPR025422 GO:0006351|GO:0043565
Gabi3749g00005 359 PANTHER TRANSCRIPTION FACTOR TGA9 3 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3749g00005 Gabi-Chr3749 51217 57754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3749g00005 1 359 Calmodulin-binding Proteins AT5G10030 69.231 0.0 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi3749g00005 DOG1 3.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3749g00005 K14431 - gmx:100793353 615.92