Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3747g00003 ATGGTGCAACAACTTAAGTTACTAGTCCTAGCCTTTGTATGGTGGTGGACATGGTGGAGTACTAGTAATCATGGTGCAGTTGCTGACCCACAAACACGTTTAGTAAACACTGGGTGCAGCACATACAACGCATCAAGCTTGAGAAGCTTCTATGTGAGTCTGAATGAAACGTTTTCAGAAATTAGAGGACAGATTAGCAATCAAAGCAAGCACTTTGCAACAGCACAAGAAGCAAGGGGAGATATGCTTGTTTATGCTATGTTTCAATGCAGAAATTACCTCTCCAAAAATGATTGTCTTGGTTGCTTCACCAACGCCACTACCCAAATCCGCAATTGCTCTGCTGCCAATGGAGCAAGAGTCATCTACGACGGATGCTTCCTCAGGTATGAGAGCGAGAGGTTCTATGATCAGACCACTGAACCTGGGAATGGTGTATTATGTGGGAACAACACTGCAAAGGAAGCACCTGCTTTTAGAGCAGCTGGACAACAAGTGCTAATGGATCTCCAAATAGCAACACCAAGAATTAAAGGCTTTTTTGCAGCTACTAAGACGCAAGTGTCTGCAGGTGGTTCAATTTATGCCATTGCACAATGTGTTGAAACTGCCACAGAAACTAGTTGTTTGGATTGCATGAAAGTTGGATACAACAACTTGCAAACTTGTCTTCCCAATAGTGATGGAAGAGCATATGATGCTGGCTGTTTTATGAGATACTCAGAGACACCCTTCTTTGCTGATAACCAAACCATTGATATCACACCCTATTTAAAACAAGGAGGTTCAAGCAAGAAATGGGCCATTATAGGTGGTGTTATTGGAGGGGCAGGTCTAGTTGTGATCCTTCTTATTGCATTATTTGCATGGCAACGATCCAAAAAACCCAAGAGGCTTCCTAGAGGTGACATATTGGGAGCAACCGAGTTGAAAGGTCCAGTTAACTACAAGTATAACGATTTGAAAGCTGCAACAAAAAATTTCAGTGATGAAAATAAACTAGGAGAAGGAGGCTTTGGGGATGTATACAAGGGTACTCTAAAAAATGGAAAAGTTGTTGCAGTCAAGAAATTACTTTTGGGAAAATCCAGCAAGATGGAGGATGATTTTGAAAGTGAAGTAAAGCTTATAAGTAATGTTCATCACAGAAATCTTGTTAGACTCCTTGGTTGTTGCATTAAAGGCCAAGAGAGAATCCTTGTTTATGAATACATGGCAAATAGCAGCCTTGACAGATTCTTATTTGGTAACCAAAAAGGCTCCCTCAATTGGAAACAACGCTTTGATATTATTTTAGGCACAGCAAGGGGACTTGCCTATCTACATGAGGAATTCCATGTTTCTATCATACATAGAGATATAAAGACTGGCAATATCCTCTTGGATGATGATCTTCAACCCAAAATAGCTGATTTTGGTTTGGCACGGCTTCTACCAGGGGATCGTTCTCATCTTAGCACAAGATTTGCAGGAACATTGGGATACACAGCACCTGAGTATGCAATCCATGGTCAATTATCAGAAAAGGCTGATACCTACAGCTATGGTATTGTAGTCCTAGAAATCATAAGTGGTCAAAAGAGTACTGAAGTGAAGGTTGATGATGATGGTCATGAATACCTTCTTCAAAGAACATGGAAACTGTATGAGAGAGGAATGCACTTGGATTTGGTGGACAAGGCCTTAGACCCTAATGACTATGATGCAGAAGATGTGAAGAAAGTCATAGAGATTGCATTGCTGTGCACTCAGGCATCAGCAGCAACAAGGCCAACAATGTCTGAAGTAGTAGTTCTACTCAAAAGCAAGAGCTTGATAGGGCATCTTCAACCAACTATGCCTGTGTTTGTTGAAACGAATCTAAAGTCTAGGGAAGACAAATCTACCTCAACTGCTTCTTCATCCAATGCTACTGCCTCCACTTCTATTCTATCAGCCAGATGA 1944 0.412 MVQQLKLLVLAFVWWWTWWSTSNHGAVADPQTRLVNTGCSTYNASSLRSFYVSLNETFSEIRGQISNQSKHFATAQEARGDMLVYAMFQCRNYLSKNDCLGCFTNATTQIRNCSAANGARVIYDGCFLRYESERFYDQTTEPGNGVLCGNNTAKEAPAFRAAGQQVLMDLQIATPRIKGFFAATKTQVSAGGSIYAIAQCVETATETSCLDCMKVGYNNLQTCLPNSDGRAYDAGCFMRYSETPFFADNQTIDITPYLKQGGSSKKWAIIGGVIGGAGLVVILLIALFAWQRSKKPKRLPRGDILGATELKGPVNYKYNDLKAATKNFSDENKLGEGGFGDVYKGTLKNGKVVAVKKLLLGKSSKMEDDFESEVKLISNVHHRNLVRLLGCCIKGQERILVYEYMANSSLDRFLFGNQKGSLNWKQRFDIILGTARGLAYLHEEFHVSIIHRDIKTGNILLDDDLQPKIADFGLARLLPGDRSHLSTRFAGTLGYTAPEYAIHGQLSEKADTYSYGIVVLEIISGQKSTEVKVDDDGHEYLLQRTWKLYERGMHLDLVDKALDPNDYDAEDVKKVIEIALLCTQASAATRPTMSEVVVLLKSKSLIGHLQPTMPVFVETNLKSREDKSTSTASSSNATASTSILSAR 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3747g00003 647 ProSiteProfiles Protein kinase domain profile. 328 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3747g00003 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
Gabi3747g00003 647 MobiDBLite consensus disorder prediction 626 647 - -
Gabi3747g00003 647 Pfam Salt stress response/antifungal 42 132 IPR002902 -
Gabi3747g00003 647 Pfam Salt stress response/antifungal 151 242 IPR002902 -
Gabi3747g00003 647 SUPERFAMILY Protein kinase-like (PK-like) 311 600 IPR011009 -
Gabi3747g00003 647 Gene3D - 31 135 IPR038408 -
Gabi3747g00003 647 Gene3D - 145 245 IPR038408 -
Gabi3747g00003 647 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 85 635 - -
Gabi3747g00003 647 Pfam Protein tyrosine and serine/threonine kinase 331 598 IPR001245 GO:0004672|GO:0006468
Gabi3747g00003 647 FunFam Cysteine-rich receptor-like protein kinase 2 292 404 - -
Gabi3747g00003 647 MobiDBLite consensus disorder prediction 624 647 - -
Gabi3747g00003 647 FunFam Cysteine-rich receptor-like protein kinase 2 31 135 - -
Gabi3747g00003 647 SMART serkin_6 328 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3747g00003 647 Gene3D Phosphorylase Kinase; domain 1 300 404 - -
Gabi3747g00003 647 ProSiteProfiles Gnk2-homologous domain profile. 141 245 IPR002902 -
Gabi3747g00003 647 FunFam Cysteine-rich receptor-like protein kinase 2 143 245 - -
Gabi3747g00003 647 Gene3D Transferase(Phosphotransferase) domain 1 405 607 - -
Gabi3747g00003 647 CDD STKc_IRAK 334 601 - -
Gabi3747g00003 647 ProSiteProfiles Gnk2-homologous domain profile. 32 135 IPR002902 -
Gabi3747g00003 647 ProSitePatterns Protein kinases ATP-binding region signature. 334 357 IPR017441 GO:0005524
Gabi3747g00003 647 FunFam Cysteine-rich receptor-like protein kinase 2 405 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3747g00003 Gabi-Chr3747 45151 53469 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3747g00003 28 647 Receptor kinase-like Gene Family AT1G70520 37.619 6.59e-130 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3747g00003 PK_Tyr_Ser-Thr 2.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3747g00003 - - gmx:100801131 941.414