Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3747g00002 ATGCTACAACTTAAGTTCTTGGTCTTAACCTTGATATGGTGCTGGTCATGGTGTAACATTGATCATCATGGTACAGTTGCAGACCCACAAACTCTATTACTCAACAATGGTTGTAGCACATACAACACAACCAACTTGCCCAATTTCTTTGCCAATATCAACGCAACGTTTTCAGAGCTGAGATCACAAGTTAGCAATGAAAGCAACCACTTTGCAACAACAAAGCAAGTCAAGGGAGATGTCCTTGTATATGCTATGTTTCAATGCAGGAATTACCTCTCCATGGCTGACTGTCTTGCATGCTTCACCACCGCCTCTGCCCAAATCCGCCACTGCTCCGCCGCCGGCGCCAATGGTGCTCGTGTCATCTATGATGGCTGCTTCCTCAGGTATGAGAGTGGCGGGTTCTTTGATCAGACCACTGAACCAGGAAATGGTGCATTATGTGGGAATCAAACTGCAAATGAGAGAACTGCTTTTAGTGCAGCTGGACAACAAGTGCTAATGAACCTTCAAATAGCAACACCCAGAATTCAAGGTTTTTTTGCAGCTACTAAGACACTGGTTTCTGGTGGTGCAATTTATGCCATTGCACAATGTGTTGAAACTATCACTGAGAGTGGTTGTCTTGATTGCTTGAAAGTTGGATACAACAACATACAGAGTTGTCTTCCCAATACTGATGGTAGAGCATATGATGCTGGCTGTTTTATGAGATACTCTGAGACACCCTTCTTTGCTGATAACCAGACCATTGATATAAGTCCCTTCTTAAAACAAGGTTCAAGCAAGAAGTGGGGCATTATTGGTGGTGGTGTTGGAGGTGCAGTCCTTGTTGTGATCCTCCTTGCAGTGTTTGCCTGGCTTAGAATATCCAAAAAACCCAAGAGAGTTCCTAGAGGTAACATATTGGGAGCAACTGAGTTGAAAGGTCCAGTCAACTACAAGTATAATGATTTGAAAGCTGCAACCAAAAATTTCAGCGACCAAAATAAACTAGGAGAAGGAGGCTTTGGCGACGTATATAAGGGTACGTTGAAAAATGGGAAAGTTGTTGCAGTCAAAAAATTACTTTTAGGCAAATCCATGGAGGATGATTTTGAAAGTGAAGTAAAGCTTATAAGCAATGTTCATCATATAAATGTGGTTCGGCTTCTTGGTTGTTGCATTAAAGGCCAAGAGAGAATCCTTGTTTATGAATACATGTCAAACAGCAGCCTTGACAGATTCTTATTTGGTGACAAAAAGGGTTCCCTCAAGTGGAAACAACGCTATGATATAATTTTAGGAATAGCAAGGGGACTTGCCTATCTACATGAGGAATTTCATGTTTCTATCATACATAGAGATATAAAGAGTGACAATATTCTCTTGGATGATGAACTTCAGCCCAAAATTTCTGATTTTGGGTTGGCAAGGCTTCTACCAGGGGATCAATCTCATCTTAACACAAGATTTGCAGGAACATTGGGATACACAGCACCTGAGTATGCAATCCATGGTCAATTATCAGAAAAGGCTGATACCTACAGCTATGGTATTGTAGTCCTAGAAATCATAAGTGGTCAAAAGAGTACTGAAGTGAAGGTTGATGATGGTGGTCATGAATACCTTCTTCAAATAGCATGGAAAATGTATGAGAAAGGCAGGCACATGGAGTTGGTGGACGAAAGATTAGACCCTAATGACTATAATGTAGAAGAAGTGAAGAATATCACAGAGATTGCTTTGCTTTGCACTCAAGCATCAGCAGCTGCAAGGCCAACATTGTCTGAAGTAGTAGTGCTTCTCAAAAGCAAGAGCTTACTTGAACATATGAGACCTTCAATGCCTGTATTTGTGAATTCGAATTTAAGGTCCAGGAGAGAAGATATTTCTGCCACAACTGGTTCCTCTACATCTAATGCTACTGCCTCCACTTCTATGGCATCAGCTAGATGA 1941 0.4137 MLQLKFLVLTLIWCWSWCNIDHHGTVADPQTLLLNNGCSTYNTTNLPNFFANINATFSELRSQVSNESNHFATTKQVKGDVLVYAMFQCRNYLSMADCLACFTTASAQIRHCSAAGANGARVIYDGCFLRYESGGFFDQTTEPGNGALCGNQTANERTAFSAAGQQVLMNLQIATPRIQGFFAATKTLVSGGAIYAIAQCVETITESGCLDCLKVGYNNIQSCLPNTDGRAYDAGCFMRYSETPFFADNQTIDISPFLKQGSSKKWGIIGGGVGGAVLVVILLAVFAWLRISKKPKRVPRGNILGATELKGPVNYKYNDLKAATKNFSDQNKLGEGGFGDVYKGTLKNGKVVAVKKLLLGKSMEDDFESEVKLISNVHHINVVRLLGCCIKGQERILVYEYMSNSSLDRFLFGDKKGSLKWKQRYDIILGIARGLAYLHEEFHVSIIHRDIKSDNILLDDELQPKISDFGLARLLPGDQSHLNTRFAGTLGYTAPEYAIHGQLSEKADTYSYGIVVLEIISGQKSTEVKVDDGGHEYLLQIAWKMYEKGRHMELVDERLDPNDYNVEEVKNITEIALLCTQASAAARPTLSEVVVLLKSKSLLEHMRPSMPVFVNSNLRSRREDISATTGSSTSNATASTSMASAR 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3747g00002 646 ProSiteProfiles Gnk2-homologous domain profile. 31 136 IPR002902 -
Gabi3747g00002 646 FunFam Cysteine-rich receptor-like protein kinase 2 293 401 - -
Gabi3747g00002 646 ProSitePatterns Protein kinases ATP-binding region signature. 333 356 IPR017441 GO:0005524
Gabi3747g00002 646 Gene3D Phosphorylase Kinase; domain 1 297 401 - -
Gabi3747g00002 646 CDD STKc_IRAK 333 598 - -
Gabi3747g00002 646 ProSiteProfiles Gnk2-homologous domain profile. 142 245 IPR002902 -
Gabi3747g00002 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Gabi3747g00002 646 FunFam Cysteine-rich receptor-like protein kinase 2 30 136 - -
Gabi3747g00002 646 SUPERFAMILY Protein kinase-like (PK-like) 310 597 IPR011009 -
Gabi3747g00002 646 Pfam Protein tyrosine and serine/threonine kinase 330 595 IPR001245 GO:0004672|GO:0006468
Gabi3747g00002 646 FunFam Cysteine-rich receptor-like protein kinase 2 402 605 - -
Gabi3747g00002 646 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 84 634 - -
Gabi3747g00002 646 SMART serkin_6 327 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3747g00002 646 Pfam Salt stress response/antifungal 38 133 IPR002902 -
Gabi3747g00002 646 Pfam Salt stress response/antifungal 149 242 IPR002902 -
Gabi3747g00002 646 Gene3D - 145 245 IPR038408 -
Gabi3747g00002 646 Gene3D - 30 136 IPR038408 -
Gabi3747g00002 646 MobiDBLite consensus disorder prediction 624 646 - -
Gabi3747g00002 646 FunFam Cysteine-rich receptor-like protein kinase 2 144 245 - -
Gabi3747g00002 646 ProSiteProfiles Protein kinase domain profile. 327 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3747g00002 646 Gene3D Transferase(Phosphotransferase) domain 1 402 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3747g00002 Gabi-Chr3747 29177 37636 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3747g00002 38 646 Receptor kinase-like Gene Family AT1G70520 35.955 2.35e-121 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3747g00002 PK_Tyr_Ser-Thr 2.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3747g00002 - - gmx:100813585 870.537