Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3747g00001 ATGTCATGGTCATGGTGGAGCTTTCATGGTGCAGTAGCAGACCCTCAAACTCGTTTACTCAACAAGGGTTGTAGCCAATACAACGCAACCAACTTGTCAAACTTCTACCAAAATCTGAACTCAACTTTGGAAGATTTGAGAACAAAGGTGAACAACCAAAGCAAGCACTTTGCCACAGCACAAGCAGCCAAGGGAGCAGACCCTGTCTATGCTATGTTTCAGTGCAGAAACTACCTCTCCAACACTGACTGCTCCGCCTGCTTCGCCACCGCCTCCGCCCAAATCCGCAACTGCTCCGCCGGTGCCAACGGTGCTCGTGTCATTTATGATGGTTGCTTTCTTAGGTATGAGAGCAATGGCTTCTTTGACCAGACCACTATGCCTGGCAATAGTATGATTTGTGGAAATCAGACTGCAGTTGGAGCCAATGCTTTTGATGCAGCTGCACAACAAGCACTAATGGATCTGCAAATAGCAACACCCAAAATTACTGGTTTCTTTGCAGCTACCAAGACACAAGTTGCTGGTGGTGCCATCTATGCCATTGCACAATGTGCTGAAAATGTCACACAGAGTGGTTGTCTTGATTGCTTAACAGTTGGATACAACAACATACAAAGTTGTTTTCCCAATACAGATGGTAGAGCATTTGATGCTGGGTGTTTTATGAGATATTCTGAGACATCCTTCTTTGCTGATAACCAGACAATTGATATCACACCCTTCTTAAAAGGAAGTTCAAGCAAGAAAGGGGCCATTATTGGTGGTGTTGTTGGAGGTGTAGGTCTTATTGTGATCCTCCTTGCACTATTTGTCTGGCTTAGAGGGTACAAGAAACCCAAGAGGGTTCCTAGAGGTGACATATTGGGAGCAACTGAGTTGAGAGGTCCAGTTAACTACAGGTATAAAGATTTGAAGTCTGCAACAAAAAATTTCAGTGATGAAAATAAACTAGGAGAAGGAGGTTTTGGAGATGTTTACAAGGGTACTCTGAAAAATGGTAAAGTAGTTGCAGTCAAGAAATTAATTTTAGGCAAATCCAGCAAGTTGGATGAACATTTTGAAAGTGAAGTCAAGCTTATAAGCAATGTTCATCATAGGAATCTAGTTCGACTTCTTGGATGTTGCAGTAAAGGCCAAGAGAGAATCCTTGTTTATGAATACATGGCAAACAACAGCTTGGACAGATTCTTATTTGGTGAAAAGAAGGGTTCTCTCAACTGGAAACAAAGGTACGATATAATTTTAGGCACAGCAAGGGGTCTGGCCTATCTACATGAGGATTTCCACGTTTGCATCATACATAGAGATATAAAGACTAACAATATCCTCTTGGATGAGGATCTTCAGCCTAGAATTGCTGATTTTGGGTTGGCAAGGCTTCTACCAGAGGACCAATCTCATCTTAGCACAAAATTTGCTGGAACATTGGGATACACAGCACCTGAGTATGCAATCCATGGTCAGTTATCAGTGAAAGCCGATACCTACAGCTTTGGTGTTGTAGTCTTAGAAATCATAAGTGGCCAAAAGAGCAGTGAATTGAGGGCAGATGATGATGGTGAATTCCTTCTTCAAAAGGCATGGAAATTGTACGAGGGAGATATGCACTTGGAGTTGGTTGACAAGACATTGGACCCTCATGAATATGATGCAGAAGAAATGAAGAAAGTTATAGAGATTGCTTTGCTGTGTACTCAAGCATCACCTGCTGCAAGACCAACAATGTCTGAAGTAGTAGTTTTACTCAAAAGTAAGAACTTGCTGGAGCAAATGAAGCCAACTATGCCTGTCTTTGTTGAAACAAACTATAGGTCCAGGGCAGACAACTCTACCTCAACTGGTTCCTCTACATCTAAAGCTACTGCTTCCACTTCTGTACTATCAGCTCGATGA 1896 0.4241 MSWSWWSFHGAVADPQTRLLNKGCSQYNATNLSNFYQNLNSTLEDLRTKVNNQSKHFATAQAAKGADPVYAMFQCRNYLSNTDCSACFATASAQIRNCSAGANGARVIYDGCFLRYESNGFFDQTTMPGNSMICGNQTAVGANAFDAAAQQALMDLQIATPKITGFFAATKTQVAGGAIYAIAQCAENVTQSGCLDCLTVGYNNIQSCFPNTDGRAFDAGCFMRYSETSFFADNQTIDITPFLKGSSSKKGAIIGGVVGGVGLIVILLALFVWLRGYKKPKRVPRGDILGATELRGPVNYRYKDLKSATKNFSDENKLGEGGFGDVYKGTLKNGKVVAVKKLILGKSSKLDEHFESEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANNSLDRFLFGEKKGSLNWKQRYDIILGTARGLAYLHEDFHVCIIHRDIKTNNILLDEDLQPRIADFGLARLLPEDQSHLSTKFAGTLGYTAPEYAIHGQLSVKADTYSFGVVVLEIISGQKSSELRADDDGEFLLQKAWKLYEGDMHLELVDKTLDPHEYDAEEMKKVIEIALLCTQASPAARPTMSEVVVLLKSKNLLEQMKPTMPVFVETNYRSRADNSTSTGSSTSKATASTSVLSAR 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3747g00001 631 SMART serkin_6 312 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3747g00001 631 FunFam Cysteine-rich receptor-like protein kinase 2 278 388 - -
Gabi3747g00001 631 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 70 620 - -
Gabi3747g00001 631 Pfam Protein tyrosine and serine/threonine kinase 315 581 IPR001245 GO:0004672|GO:0006468
Gabi3747g00001 631 ProSitePatterns Protein kinases ATP-binding region signature. 318 341 IPR017441 GO:0005524
Gabi3747g00001 631 Gene3D Transferase(Phosphotransferase) domain 1 389 599 - -
Gabi3747g00001 631 SUPERFAMILY Protein kinase-like (PK-like) 297 602 IPR011009 -
Gabi3747g00001 631 CDD STKc_IRAK 318 584 - -
Gabi3747g00001 631 MobiDBLite consensus disorder prediction 607 631 - -
Gabi3747g00001 631 Pfam Salt stress response/antifungal 24 118 IPR002902 -
Gabi3747g00001 631 Pfam Salt stress response/antifungal 140 227 IPR002902 -
Gabi3747g00001 631 Gene3D - 16 121 IPR038408 -
Gabi3747g00001 631 Gene3D - 130 230 IPR038408 -
Gabi3747g00001 631 ProSiteProfiles Gnk2-homologous domain profile. 17 121 IPR002902 -
Gabi3747g00001 631 FunFam Cysteine-rich receptor-like protein kinase 2 129 230 - -
Gabi3747g00001 631 ProSiteProfiles Protein kinase domain profile. 312 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3747g00001 631 FunFam Cysteine-rich receptor-like protein kinase 2 16 121 - -
Gabi3747g00001 631 Gene3D Phosphorylase Kinase; domain 1 289 388 - -
Gabi3747g00001 631 ProSiteProfiles Gnk2-homologous domain profile. 127 230 IPR002902 -
Gabi3747g00001 631 Coils Coil 36 56 - -
Gabi3747g00001 631 FunFam Cysteine-rich receptor-like protein kinase 2 389 591 - -
Gabi3747g00001 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3747g00001 Gabi-Chr3747 12877 17890 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3747g00001 7 631 Receptor kinase-like Gene Family AT1G70520 37.089 3.80e-129 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3747g00001 PK_Tyr_Ser-Thr 1.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3747g00001 - - gmx:100813585 1036.56