Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3744g00054 ATGTTGCACATGGCAAAATCATTATCTATAACACTTGGCCAAGTCATGTCCTCTGCTAGATTGGCCAGACCAACCCAATGCTTGCGTCTTCTCTCCACAAATCCCACCCGTTATCCGCTTCAGTACGATATGATCATCAACCGTCCAATCAACTCTGACCTCAATCAAACACGCCGTCGACCTGTTCGACGAAATGACTCTCCTTCTGAGACTTTTTCCGAACCGGACGAACCCACTTCCGAGTTGGGTTTAGATAGCTGGGTCGACCGGAAACTGGCTTCCGAGGCCGAACCGGGCCAACCCACTTCGCAAAAATTGGAACTTGACAAGGCCAAGAGGAAGTATTACAACAAACGGAGGAAGAGGATGTATGGGTCGGAATCTGATGAAGAGGGTAACCGACCCGAGGATAATTTCGTTGAATTGAAGCCTGAGGTGGTTGAGTTTCCCACTTTGCACAGAAGAGAAGAGGAATTGTATTTCTACGACACGTTTGCGTATCCTTGGGAGAAGGATAAGCATTATAAGATGGTTTATCAGTTGGAGAAGAAGTACTTTCCTGACCAATGCCTTGATAAAGCGTTTCTCCAATCAGGACAATCAAATGCAAATGCAAATGCAAATGCAGATGCAAATAGAAAGGACAAGGCTAGGAAAAGAGTTGGTGGTGTTAGTAGTAGGGAGAAGAAAGATGAGGTTGGTGTTGGTGGTGATAACAAGTTGGTGTTTTTTGAGGAGAAAGGGGAAGAAGAAAAAGAGAAGGGTGATGGTGATGCAAGTAAAGATCTTACGGAAAAGAAGGTTGAGGAGTTCTTTAAGGGCTTGAAGAAAGTTCCCAATGAAGATGCACAAGTTGAAGAGCCATATCTTTCTTCAAGGAGGACTGGCCTCCCTCCCATATGGGATAGTCCACATGGCACTGTGGTTTTGGTTAACAAACCCAAAGGTTGGACTTCATTCACAGTTTGTGGAAAGCTTCGTCGCATCGTCAAAGTGAAGAAGGTAGGCCATGCTGGAACTCTTGACCCAATGGCTACTGGTTTATTGATTGTTTGCGTTGGTAAAGCAACAAAACTGGTAGACAGATATCAAGGGATGATTAAGGGTTATAGTGGGATTTTCCGCCTAGGGGAGGCTACTTCAACATGGGATGCTGATTCACCAGTCATTCAGCGTGAGCCATGGGAGCACATCAAAGACGAGGACATAAAGAAAAATGCTTTGTCCTTTTGTGGGGAGATCTGGCAAGTTCCTCCTATGTTCTCTGCTATCAAAGTTGGAGGTGAAAAGATGTATGACAAAGCAAGGAGAGGAGAAAGTATTGAACTTTCGCCTAGACGAATTTCAATTTTCCTGTTTGACATAGAGCGTAGCTTGAATGACAGGCAAAATTTGATTTTTAGAGTGACATGTTCTAAAGGGACATATATTCGGTCACTCTGTGCAGATTTGGGGAAGGCTCTTGGCAGCTGTGCCCATTTAACTGCTCTCCGAAGAGATTCAATTGGGCAATATTTAGCGGATGATGCATGGGACTTTCAAGAGCTGGAAGAGGCTATCACCAAAAGTTATCTCTAA 1578 0.4449 MLHMAKSLSITLGQVMSSARLARPTQCLRLLSTNPTRYPLQYDMIINRPINSDLNQTRRRPVRRNDSPSETFSEPDEPTSELGLDSWVDRKLASEAEPGQPTSQKLELDKAKRKYYNKRRKRMYGSESDEEGNRPEDNFVELKPEVVEFPTLHRREEELYFYDTFAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLQSGQSNANANANADANRKDKARKRVGGVSSREKKDEVGVGGDNKLVFFEEKGEEEKEKGDGDASKDLTEKKVEEFFKGLKKVPNEDAQVEEPYLSSRRTGLPPIWDSPHGTVVLVNKPKGWTSFTVCGKLRRIVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGIFRLGEATSTWDADSPVIQREPWEHIKDEDIKKNALSFCGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFLFDIERSLNDRQNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIGQYLADDAWDFQELEEAITKSYL 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3744g00054 525 SUPERFAMILY Pseudouridine synthase 307 520 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Gabi3744g00054 525 Hamap tRNA pseudouridine synthase B [truB]. 305 525 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Gabi3744g00054 525 Gene3D Pseudouridine synthase 302 524 - -
Gabi3744g00054 525 MobiDBLite consensus disorder prediction 57 71 - -
Gabi3744g00054 525 MobiDBLite consensus disorder prediction 211 233 - -
Gabi3744g00054 525 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 184 523 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Gabi3744g00054 525 FunFam tRNA pseudouridine synthase B 302 524 - -
Gabi3744g00054 525 MobiDBLite consensus disorder prediction 203 233 - -
Gabi3744g00054 525 MobiDBLite consensus disorder prediction 52 82 - -
Gabi3744g00054 525 NCBIfam tRNA pseudouridine(55) synthase TruB 307 516 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Gabi3744g00054 525 Pfam TruB family pseudouridylate synthase (N terminal domain) 327 477 IPR002501 GO:0006396
Gabi3744g00054 525 Pfam tRNA pseudouridylate synthase B C-terminal domain 478 521 IPR032819 -
Gabi3744g00054 525 CDD PseudoU_synth_EcTruB 308 519 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3744g00054 Gabi-Chr3744 570865 577005 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3744g00054 308 499 NAC Transcription Factor Family AT3G57150 33.854 2.18e-19 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3744g00054 K03177 - qsa:O6P43_004707 741.88