Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3744g00053 ATGTATAATTGTGGGAAGTTAAGGAACATCAGCTTTCCATTCTGGGGAGAAGATCGTCCAAATGAGTGTGGCCATCCTTTGTTACATCTCAATTGCACAAATGATCAAACCTACATATCCATCAATGACATCAAATACAAGGTCTTGGATGCCAACCAAGATAACCAGACTTTGAGAATTGCTAGAGTTGACTACTTGCAAGACCTATGCCCATTAAAATTTCTCAACACCACCCTTGATCCTGAGTTGTTTGTTTATGGACCAAACTATACAAATATTACCTTCTTCTATGGTTGTCATGAATCAAATCCTTTCCTTAATTTCAGCCCTGGACGTTTTCCTTGTACCATGAATATTGGGAGTATCAATGTATATGTCTATACTCAGTTTGAGGCTTTAGGTCCTAGCATGCTTTGCAATACAAGCGTGGTTGTTCCAGTTCAAGTTACATTATCATTGCTTGATATTGGGAATGTAACCAAAATACAAGGGGCACTCACAGATGGATTTGAAGTGAGATGGATAGCTGGTGTTGTAGAATGTGAAGACTGTAAGAAATCAGGTGGGGTATGCGGTTATGATTTGAATTCAAATCAAGCAACATGTTACTGCAAATCTTCAGACTCAGGGTCCATAACTTGTCCTTCTCCAGTTCAAGGTAAAAAGTCCAAGGTAGTAGCTGTTGGAATAGCCTCAGGCATTGTTGCTGGAATTCTTCTTGGATGTTGGGTGTACTTGCAACGAAAAAAAAGAATTGTTGAACAATCTAAAAGCAAGGATCTATTCATTCTTCCTTCAAGCAATGGCACTGTAAACTCAACAACTAATGTGTCTTCAAGTATTTCTTCTTATCCCTCCTCCAAATCTGACTCTGTGCAGAAGAGTTTATACTTTGGTGTCCATGTGTTTAGCTATGCTGAACTAGAACAAGGTACAAAAAAATTTGACCCTTCAAGGGAACTTGGTGATGGAGGATTTGGCACTGTTTACTATGGAAATCTCAAAGATGGACGTGAGGTTGCAGTGAAACGCCTTTACGAAAGAAATTTGAAACGTGTTAGTCAATTCATGAATGAAGTTGAGATTCTAGCTCGGTTAAGGCATAAGAACCTGGTTGCACTCTATGGATGCACCTCTAGACAAAGCCAAGAACTTCTCCTTGTTTATGAATACATACCAAATGGAACAGTTGCTGACCATCTTCATGGAAAAAGAACAAAGTCAATGTTACTTCCTTGGCAAGTAAGATTGAACATTGCAATAGAAACAGCTGAGGCATTGTCCTACCTTCATGCATCAGATGTCATACACCGTGATGTTAAGACCAACAATATTCTCCTGGATGATAAATTTAGTGTAAAGGTTGCTGATTTTGGTCTCTCAAGGTTGTTCCCAAATGATGTAACTCATGTGTCAACTGCTCCACAAGGAACACCTGGTTATGTGGACCCTGAGTATTACCAGAGTTACCAACTCACTGATAAAAGTGATGTTTATAGCTTTGGTGTGGTTTTAGTTGAGCTTGTATCATCATTACCAGCTGTTGACATCACTAGGCATCGCCATGATGTGAATTTAGCTAACATGGCTATTAGTAAAATTGTAAGCCAATCACTGCAAGAGTTGGTTGATCCATATCTTGGATTTGAAAGAGACTATGCTATAAGACAGATGATAACAGCAGTGGCAGGGTTGGCATTTAGGTGTCTGCAGGAGATAGACATGAGACCCTCCATGGAAGAGGTGTTGGAGGTTTTGAGAGGAATCCAATATGAAGGATATGATGCTCATAAAATAAAACAAGTTGTGGATATTATTAGAGCAGATGAAGTTACACTTTTGCAGAAAACTCATTATCCCTTTTCACTAGATTCAGTTTCTGATAAATGGGGTTCCTTATAG 1902 0.3906 MYNCGKLRNISFPFWGEDRPNECGHPLLHLNCTNDQTYISINDIKYKVLDANQDNQTLRIARVDYLQDLCPLKFLNTTLDPELFVYGPNYTNITFFYGCHESNPFLNFSPGRFPCTMNIGSINVYVYTQFEALGPSMLCNTSVVVPVQVTLSLLDIGNVTKIQGALTDGFEVRWIAGVVECEDCKKSGGVCGYDLNSNQATCYCKSSDSGSITCPSPVQGKKSKVVAVGIASGIVAGILLGCWVYLQRKKRIVEQSKSKDLFILPSSNGTVNSTTNVSSSISSYPSSKSDSVQKSLYFGVHVFSYAELEQGTKKFDPSRELGDGGFGTVYYGNLKDGREVAVKRLYERNLKRVSQFMNEVEILARLRHKNLVALYGCTSRQSQELLLVYEYIPNGTVADHLHGKRTKSMLLPWQVRLNIAIETAEALSYLHASDVIHRDVKTNNILLDDKFSVKVADFGLSRLFPNDVTHVSTAPQGTPGYVDPEYYQSYQLTDKSDVYSFGVVLVELVSSLPAVDITRHRHDVNLANMAISKIVSQSLQELVDPYLGFERDYAIRQMITAVAGLAFRCLQEIDMRPSMEEVLEVLRGIQYEGYDAHKIKQVVDIIRADEVTLLQKTHYPFSLDSVSDKWGSL 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3744g00053 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Gabi3744g00053 633 Gene3D Phosphorylase Kinase; domain 1 286 391 - -
Gabi3744g00053 633 SUPERFAMILY Protein kinase-like (PK-like) 289 591 IPR011009 -
Gabi3744g00053 633 Pfam Protein kinase domain 318 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3744g00053 633 CDD STKc_IRAK 321 589 - -
Gabi3744g00053 633 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 2 631 IPR044652 GO:0004672
Gabi3744g00053 633 Gene3D Transferase(Phosphotransferase) domain 1 392 603 - -
Gabi3744g00053 633 Pfam Wall-associated receptor kinase C-terminal 136 206 IPR032872 -
Gabi3744g00053 633 ProSitePatterns Protein kinases ATP-binding region signature. 321 343 IPR017441 GO:0005524
Gabi3744g00053 633 FunFam Wall-associated receptor kinase-like 20 392 599 - -
Gabi3744g00053 633 ProSiteProfiles Protein kinase domain profile. 315 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3744g00053 633 SMART serkin_6 315 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3744g00053 633 Pfam Wall-associated receptor kinase galacturonan-binding 3 62 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3744g00053 Gabi-Chr3744 566006 570160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3744g00053 2 632 Receptor kinase-like Gene Family AT1G25390 42.226 1.01e-144 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gabi3744g00053 Pkinase 8.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3744g00053 - - aprc:113867558 839.721