Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3742g00001 ATGGAGTCTAGGATGGATCAGTATGAGATCATGGAGCAGATCGGTCGCGGAGCTTTTGGGGCTGCTATTCTTGTTCATCACAAGGCTGAGAAGAAGAAATACGTGTTGAAAAAAATTAGGCTTGCGAGGCAGACTGAACGATGCAGAAGATCTGCTCATCAAGAGATGGCTCTTATTGCTCGAATCCAGCACCCTTATATTGTGGAATTCAAGGAGGCATGGGTTGAGAAGGGTTGCTATGTTTGTATTGTCACTGGATACTGTGAAGGTGGAGACATGGCTGAATTGATGAAAAAATCAAATGGTGCTTACTTTCCTGAGGAGAAACTCTGCAAATGGTTCACTCAACTACTGTTGGCGGTAGAATACCTACATTCAAATTATGTTCTACATCGTGACTTAAAGTGTTCCAACATCTTTCTTACCAAGGATCAGGATCTTCGCCTGGGGGATTTTGGACTTGCTAAGACACTAAAAGCAGATGATTTGGCTTCTTCGGTGGTAGGAACTCCCAATTACATGTGTCCTGAACTGCTTGCAGATATTCCGTATGGATTCAAATCTGATATTTGGTCACTAGGATGCTGTGTATACGAGATGGCTGCTCATCGCCCTGCTTTTAAAGCTTTTGATATGGCTGGATTGATAAGCAAGATAAATCGTTCCTCTATTGGCCCTTTACCTCCATGTTATTCCCCTTCCTTGAAAACACTAATAAAGGGCATGCTGAGAAAAAATCCTGAGCATCGACCAACAGCATCTGAGGTGTTAAAGCACCCTTATTTGCAACCTTATGTTGATCAATATCGTCCATCTTTCAGTCCTCCAATTTCTGCTGTCAACTATCCTCGGAAAAGTATGGCTGAAAGTGAAAACAGTTGTAGTTCAAGTAGTGACAGAGATAGTTTGATGTCAAATGAGAGAAACATTGCAACAGCAGTGCCAAAGTGTAATAACAAAGCCACCGAGACAGATCTAGCATCAATTGATGATGATGGCTCAGAGCATCTCCTGCCAAGTGAGGAAGAAAATGGGTCTAGCAATGCCAATGCCAAAGCCAAAACAGATGAGCAAGAGGTGATGAAACCATCTCACAATGAACAGTGTTCTAATGTTGAAGCTAAGCAGCCAAAAACAATTAGAAATATAATGATGGCATTGAAGGAGGGAAAAGTTAGAGAAACAACTTCTCCAATGAGAGGAAGTCGCGTAAAGGCTGGTGGTGTACCAACTCAGAAAATAAATACAGAGACATTGTCCAGATTGCCTAAGCCTACTTTTATTGCTCCTGGTTTGAAGCCTAATTTAGAGTCACCAAATGTTGCACTAGCAAAGGCAACTACTGATTCTGCAAAAAGGATTCAGGGATCACATCGTTCAAAGCACCAGTTACTGATGACAGAATCTTCACCAAAAGTTAAACCCAGACATGATTTGACTCCACCATCTGGTCTTATCAAACAAGTAGAAGGAGATGGAGTTCCTGCCAAGTCAAGGCAAAGGACTCCCCCAACCTTACTTAGACGAACTTCATTTCCAGCACGAATGAGGCTGGCTGGGCATGATGTTCCAAATGATACTGGGAAGCTAGTTCTAAATAAAATAACACAGGAGCCTGAGATGAGCCATTGTCTGTTGACCAATGGCAATGTGCCTCATAGTTCTAGACAGATTACTAGAGAAAGAGAAGCTCAGAAGGCTTTTGAAAGAAGTTCCAAAGGATATACAGACAGCAGTAATTCTGCCTCATCTTCAGTTTCCATTCAAGGTTGTGAACTTGTTGATGATGCAACGACTTTTATTGACATGAGAGAACAGATAATTGCTGATCATGAGAGTGTAACCCACATTGTAGGTGTGGAATCATGTCCAGACAGCAGCCAACCTACAACCTGTTCACATTGTAAGATGGTTGAAAAAGTGTCTGAGCAAGCCTGTGAGGTTTCCCTGAATTTTCAGAATACTATTAGTAGTAATGAGAAAGTGAGTTCCAGTTTAACTCTTGATCACCATGTTGAAGATTCTAAGGTAATGTTTGCTTCTGAAGATGGTCTTCTCATAAATCAGACTACTATATCTGCTGCCTCTGAGTGTGATGATGGGCCTCTAGACAACCCTTCTGAAGCCACCATAGAAATCCAAGATCTTCAAGATATTTCCAAGGAAATGACTTTAACCAAGTCTCTCAAACATCCACCCCCAAGTTCTGGAGAAAAGTCTGTTTGTGAAGAAGTTGGTGCAGTAAGCAAGCCCAATGATATGCCTATTATATTGAGCCAGCCAAAACTCATGTGTAAGTCCACTGGTGATGATAAATTCACAGTGAGGGAGCGACTATCCCCAGTGGCTGAAACTGCTCCTCTGATTACCACTGCTAATCTATCAAGCCAGAAAATTTTGCAAGAGAAAGGAACTGTCTTGCAGAATGCAGCACCAGAAAGACCGGATACTGGTCATCTTCCTCCAGCCTTTGATGATGTCATACATGTTATACGCCATAGTAGTTACCGCGTTGGGAGTGAGCAGCCATTGAAGGAATCTGTGGAGATGGGAGTTCAAAATGTGGATGTTGGTAAGTTCATCAACGTTGTGAGGGATGATTTAGAAAAGAGAAACATAAGCTCACCTTTGACCCTTAAATCTTCAAGTTGCTCTGAAGCTGCAAGCTTGAAATCAAATATTTCTGATCAGTTGGAAATGAGAAACACGAGCACTCCTCCTGTCCTTAAATCTTCAAGTTTCTCTGATGCTTCAAGCATGAAATCAAGTATTTCTGATCACCCTGGCCTTAAGGAACAAGATGTGAGTAATCCTATTTCTTTAGTTTCAGAATCTGATTCAGCTGAGCTCAGTAAATGTACCACTCCTATGACTGAAGAAAAACCACCGGCAAAGGAAACATTGGATGTGAAATCTTTCAGGCAGAGAGCAGAGGCACTTGAAGAGCTCTTGGAATTGTCTGCAGAGTTGTTGCAGCAAAATAGATTGGAAGAACTTCAAGTTGTTCTAAAGCCCTTTGGTAAAGATAAGGTCTCCCCAAGGGAAACAGCCATTTGGTTAGCCAAGAGTCTTAAAGGAATGATGTTTGAGGAAAGTGGTGGACGCAGTTCATGA 3114 0.4191 MESRMDQYEIMEQIGRGAFGAAILVHHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKSNGAYFPEEKLCKWFTQLLLAVEYLHSNYVLHRDLKCSNIFLTKDQDLRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCVYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEVLKHPYLQPYVDQYRPSFSPPISAVNYPRKSMAESENSCSSSSDRDSLMSNERNIATAVPKCNNKATETDLASIDDDGSEHLLPSEEENGSSNANAKAKTDEQEVMKPSHNEQCSNVEAKQPKTIRNIMMALKEGKVRETTSPMRGSRVKAGGVPTQKINTETLSRLPKPTFIAPGLKPNLESPNVALAKATTDSAKRIQGSHRSKHQLLMTESSPKVKPRHDLTPPSGLIKQVEGDGVPAKSRQRTPPTLLRRTSFPARMRLAGHDVPNDTGKLVLNKITQEPEMSHCLLTNGNVPHSSRQITREREAQKAFERSSKGYTDSSNSASSSVSIQGCELVDDATTFIDMREQIIADHESVTHIVGVESCPDSSQPTTCSHCKMVEKVSEQACEVSLNFQNTISSNEKVSSSLTLDHHVEDSKVMFASEDGLLINQTTISAASECDDGPLDNPSEATIEIQDLQDISKEMTLTKSLKHPPPSSGEKSVCEEVGAVSKPNDMPIILSQPKLMCKSTGDDKFTVRERLSPVAETAPLITTANLSSQKILQEKGTVLQNAAPERPDTGHLPPAFDDVIHVIRHSSYRVGSEQPLKESVEMGVQNVDVGKFINVVRDDLEKRNISSPLTLKSSSCSEAASLKSNISDQLEMRNTSTPPVLKSSSFSDASSMKSSISDHPGLKEQDVSNPISLVSESDSAELSKCTTPMTEEKPPAKETLDVKSFRQRAEALEELLELSAELLQQNRLEELQVVLKPFGKDKVSPRETAIWLAKSLKGMMFEESGGRSS 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3742g00001 1037 MobiDBLite consensus disorder prediction 895 954 - -
Gabi3742g00001 1037 MobiDBLite consensus disorder prediction 330 365 - -
Gabi3742g00001 1037 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3742g00001 1037 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3742g00001 1037 Gene3D Transferase(Phosphotransferase) domain 1 90 335 - -
Gabi3742g00001 1037 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Gabi3742g00001 1037 MobiDBLite consensus disorder prediction 452 504 - -
Gabi3742g00001 1037 MobiDBLite consensus disorder prediction 556 570 - -
Gabi3742g00001 1037 MobiDBLite consensus disorder prediction 546 583 - -
Gabi3742g00001 1037 FunFam Serine/threonine-protein kinase Nek2 5 87 - -
Gabi3742g00001 1037 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 985 - -
Gabi3742g00001 1037 CDD STKc_Nek 7 262 - -
Gabi3742g00001 1037 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Gabi3742g00001 1037 Coils Coil 974 1000 - -
Gabi3742g00001 1037 SUPERFAMILY Protein kinase-like (PK-like) 4 301 IPR011009 -
Gabi3742g00001 1037 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Gabi3742g00001 1037 MobiDBLite consensus disorder prediction 340 354 - -
Gabi3742g00001 1037 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3742g00001 1037 FunFam Serine/threonine-protein kinase Nek5 90 327 - -
Gabi3742g00001 1037 MobiDBLite consensus disorder prediction 895 965 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3742g00001 Gabi-Chr3742 20101 27327 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3742g00001 14 263 MAP Kinase Kinase Kinase AT1G53570 31.373 3.39e-36 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gabi3742g00001 Pkinase 6.8e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3742g00001 K08857 - gmx:100818747 1592.79