Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3733g00001 ATGACTATGAATCTATCTCATTCTCATGGCATTTTGTTGAAGAGGAATGGAAACATAGAGCGAGTGACATCATCTTTCATGGGTTTGTTTCTTCTTTGGTCACTCTTGTTGCTTCATTTGGTGCTTCAGGTTTCGGGCAACGCTGAAGTTGATGCCCTGATTGCATTGAAGAACAGTTTGAATGATCAGAACAGTTATCTTGGTAGCTGGGATGCCACCCTTCCCAATCCATGCACATGGTTTCATATTAAATGCAACCTCGATAATAGCGTGACCCGTGTTGATCTTGGAAATTCAAACCTGATGGGACAACTGGTTCCACAGCTTGGTCAGCTCCCAAATTTGCAATACTTGGAACTTTACAGTAATAACATAACTGGGAATATACCAAACGAGCTTGGAAATTTGGCAAACTTGGTGAGCTTGGATCTTTACTCGAACAAGTTTACTGGTCCCATTCCTAACACACTGGCCAACCTTAAAAAGCTACGTTACCTGCGTCTCAACAATAACAGCTTGACCAGAAACATTCCTATGTCTTTGACCAATGTTATTACCCTCCAAATCCTTGATTTAGCAAACAACAACTTATCAGGAGATATCCTAGCCAATGGTTCATTTTCAATGTTTACTCCTGTCAGTTTTAACAATAATCCACTCTTGAAGAACAAATCCCTTCTAGCTCCGCCACTTGTTCCACCACAACAAACTACGTCAGGTAGGAGTGCCACTGGGACTATTGCTAGAGGAGTTGTTGTGGGTGCTGTTCTGTTGTTTGCAGCCCCTGCAATTGCGCTTGCTTATTGGCTTAGAAGAAAGCCAAAGGATTATTTCATTGATGTTCCTGAGGAGGATCGTGAAGTTCACCTTGGTCAGCTTAAAAAGTTTTCACTGCGTGAACTGCAAGTTGCAACAGATAGCTTTAATAACAAAAACATTCTAGGTAGAGGTGGATTTGGAAAAGTTTATAAAGGACGCTTAGCAAATGGTTCTCTTGTTGCAGTAAAAAGACTTGAAGAGGAACGCACCCAAGGCGGGGAGCTACAATTTCAAACTGAAGTAAAAATGATCAGCATGGTTGTGCATCGAAATTTGCTTCGGCTGTGTGGTTTTTGCATGACCCCTACTGAGAGGTTACTTGTATTTCCTTTCATGGTTAATGGAAGTGTAGCATCTTGTTTACGAGGTACTAATGACCCTAACTGGTAA 1209 0.4152 MTMNLSHSHGILLKRNGNIERVTSSFMGLFLLWSLLLLHLVLQVSGNAEVDALIALKNSLNDQNSYLGSWDATLPNPCTWFHIKCNLDNSVTRVDLGNSNLMGQLVPQLGQLPNLQYLELYSNNITGNIPNELGNLANLVSLDLYSNKFTGPIPNTLANLKKLRYLRLNNNSLTRNIPMSLTNVITLQILDLANNNLSGDILANGSFSMFTPVSFNNNPLLKNKSLLAPPLVPPQQTTSGRSATGTIARGVVVGAVLLFAAPAIALAYWLRRKPKDYFIDVPEEDREVHLGQLKKFSLRELQVATDSFNNKNILGRGGFGKVYKGRLANGSLVAVKRLEEERTQGGELQFQTEVKMISMVVHRNLLRLCGFCMTPTERLLVFPFMVNGSVASCLRGTNDPNW 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3733g00001 402 SUPERFAMILY L domain-like 48 218 - -
Gabi3733g00001 402 FunFam Somatic embryogenesis receptor kinase 1 278 384 - -
Gabi3733g00001 402 Pfam Leucine Rich Repeat 162 181 IPR001611 GO:0005515
Gabi3733g00001 402 Pfam Leucine Rich Repeat 138 160 IPR001611 GO:0005515
Gabi3733g00001 402 Pfam Leucine Rich Repeat 114 136 IPR001611 GO:0005515
Gabi3733g00001 402 Gene3D Ribonuclease Inhibitor 46 228 IPR032675 -
Gabi3733g00001 402 Gene3D Phosphorylase Kinase; domain 1 278 384 - -
Gabi3733g00001 402 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 29 394 - -
Gabi3733g00001 402 FunFam Somatic embryogenesis receptor kinase 1 45 237 - -
Gabi3733g00001 402 Pfam Protein tyrosine and serine/threonine kinase 311 397 IPR001245 GO:0004672|GO:0006468
Gabi3733g00001 402 Pfam Leucine rich repeat N-terminal domain 47 86 IPR013210 -
Gabi3733g00001 402 SUPERFAMILY Protein kinase-like (PK-like) 288 398 IPR011009 -
Gabi3733g00001 402 ProSitePatterns Protein kinases ATP-binding region signature. 314 336 IPR017441 GO:0005524
Gabi3733g00001 402 ProSiteProfiles Protein kinase domain profile. 308 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3733g00001 Gabi-Chr3733 46346 56272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3733g00001 31 395 Receptor kinase-like Gene Family AT4G33430 64.734 3.54e-167 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gabi3733g00001 Pkinase 1.2e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3733g00001 K13416 - rcu:8277786 520.005