Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3731g00002 ATGCTAGGGGACTCAGCTGTATTGGGAACTGGAGGAGGAAGCTCTGGTGATGATGCAGTGGCTGCTGTGGTGGCAGCAGCTGCATCATCAGCAGGAGGAGGAGGTGCTCATGACGGTGGTGACACGGTGGTGGGTGGTGGAGGATCAAATTCAGGGGATGATGAAAGGGGTAGAGGGGAGGAGGGTGACCGGAGCTTTGGTGGGAACAGGTGGCCAAGACAAGAGACTTTGGCTTTGTTGAGGATAAGGGCTGATATGGACGTGGCCTTTAGAGATGCCAGTGTTAAGGGTCCCTTATGGGAAGAGGTCTCAAGGAAACTTGCAGAGTTAGGCTATCACAGAAACGCCAAGAAATGCAAAGAGAAATTCGAGAACGTTTACAAGTACCACAAGAGAACCAAAGAAGGACGAAGTGGGAAATCAGATGGCAAAACTTATAGATTCTTTGATCAATTAGAAGCACTTGAAAACAACCCTTCAATTCTCTCCCCAACAACAACAACACCACAACTCCAAACCACCACTAAATGCAAAACCAGTTTCAGTAATAGTAACAACTTCAACGTTGCCAATTCCACAACCATTCTCAACACCCCATCAATAAACCTCACAATCCCTTCATTCCCACCACCAAACCCTACAAATTTCACATTATCATCAACACCAACAAACCCTCCTTCTTTCCCCAACAACATCCCCACCGATCTCTTCTCGAATTCGAGCTCTTCCTCGACCTCTTCCGACGACACCTTGGAGGGGGGAAGGCGCAAGAGGAAGAGAAAATGGAAGGACTTCTTCGAGAGACTAATGAAGGAAGTGATTGACAAACAAGAAGAGCTGCAAAGGAGGTTCTTGGAAGCAATTGAGAAGCGAGAAAGGGAAAGAGTTGCTAGAGAAGAAGCATGGAGAATGCAAGAAATGCAAAGAATCAATAGAGAAAGGGAAATTCTTGCACAAGAGAGATCCATAGCTGCAGCAAAAGATGCAGCTGTTATGTCATTCTTGCAAAAGATTGCTGAACAACAAAACCTTGGACCTGCATTGAATAACTCCAATTTTCCAATGCCACAAGCAACTATACCATCACCACCGCCACCACCATCACAACCAGCAGGACAGGTTATTATACATCCGGCCCCACAACAACAACAGCAACAACAACATCAGCAGCAACAAATGACCAACATGGAAATCATAGAAGCAAATAATAATAATAATAATGGTGAGAATTTGATGATGCAAGCAAGTTCTTCAAGGTGGCCAAAAGTGGAGGTTCAGGCACTAATAAATCTGAGAACGAATCTGGAAACAAAGTACCAAGAAACTGGACCAAAGGGTCCACTATGGGAAGAAATCTCATCGCTAATGAGAAAGATTGGGTACAATAGGAGTGCCAAAAGGTGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAGGAAAGTAACAAGAAGAGACCAGAAGATTCCAAGACTTGTCCATATTTTCACTTGTTGGATGCTCTATATAAGGAGAAGAGCAAGCATGAGAGTCCCTTGAAGCTTGACACCACGGTGGCGCCGCTAATGGTGCGGCCGGAGCAGCAATGGCCTCCTCAATTGGCAGCGACTGCGGAGAATGATGACTCCGCAGACCACCGACCGCGGCATCAGCACGAGGAGGAAGATGATGACGGTGGTGATGATGAGGAAGAGAAGGAAATTGGTGATGACGATGATGAAGATGAAGATGATGAAGGAGGTGGTAATAACTATGAGATAGTGGCAAGCAAGCCAGCTTCTTCAGTGGGTGTTTCTGCTGAGTGA 1815 0.4584 MLGDSAVLGTGGGSSGDDAVAAVVAAAASSAGGGGAHDGGDTVVGGGGSNSGDDERGRGEEGDRSFGGNRWPRQETLALLRIRADMDVAFRDASVKGPLWEEVSRKLAELGYHRNAKKCKEKFENVYKYHKRTKEGRSGKSDGKTYRFFDQLEALENNPSILSPTTTTPQHXQTTTKCKTSFSNSNNFNVANSTTILNTPSINLTIPSFPPPNPTNFTLSSTPTNPPSFPNNIPTDLFSNSSSSSTSSDDTLEGGRRKRKRKWKDFFERLMKEVIDKQEELQRRFLEAIEKRERERVAREEAWRMQEMQRINREREILAQERSIAAAKDAAVMSFLQKIAEQQNLGPALNNSNFPMPQATIPSPPPPPSQPAGQVIIHPAPQQQQQQQHQQQQMTNMEIIEANNNNNNGENLMMQASSSRWPKVEVQALINLRTNLETKYQETGPKGPLWEEISSLMRKIGYNRSAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHLLDALYKEKSKHESPLKLDTTVAPLMVRPEQQWPPQLAATAENDDSADHRPRHQHEEEDDDGGDDEEEKEIGDDDDEDEDDEGGGNNYEIVASKPASSVGVSAE 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3731g00002 605 MobiDBLite consensus disorder prediction 376 393 - -
Gabi3731g00002 605 SMART sant 417 479 IPR001005 -
Gabi3731g00002 605 SMART sant 67 129 IPR001005 -
Gabi3731g00002 605 MobiDBLite consensus disorder prediction 347 393 - -
Gabi3731g00002 605 MobiDBLite consensus disorder prediction 560 586 - -
Gabi3731g00002 605 ProSiteProfiles Myb-like domain profile. 413 477 IPR001005 -
Gabi3731g00002 605 ProSiteProfiles Myb-like domain profile. 69 127 IPR001005 -
Gabi3731g00002 605 MobiDBLite consensus disorder prediction 159 179 - -
Gabi3731g00002 605 CDD GT1 419 484 - -
Gabi3731g00002 605 Pfam Myb/SANT-like DNA-binding domain 419 506 IPR044822 -
Gabi3731g00002 605 Pfam Myb/SANT-like DNA-binding domain 69 155 IPR044822 -
Gabi3731g00002 605 CDD GT1 69 134 - -
Gabi3731g00002 605 FunFam Trihelix transcription factor GT-2 71 132 - -
Gabi3731g00002 605 MobiDBLite consensus disorder prediction 53 68 - -
Gabi3731g00002 605 MobiDBLite consensus disorder prediction 218 250 - -
Gabi3731g00002 605 MobiDBLite consensus disorder prediction 1 70 - -
Gabi3731g00002 605 MobiDBLite consensus disorder prediction 544 559 - -
Gabi3731g00002 605 MobiDBLite consensus disorder prediction 203 253 - -
Gabi3731g00002 605 PANTHER FI21293P1 44 558 - -
Gabi3731g00002 605 Gene3D - 421 482 - -
Gabi3731g00002 605 Gene3D - 71 132 - -
Gabi3731g00002 605 MobiDBLite consensus disorder prediction 528 605 - -
Gabi3731g00002 605 Coils Coil 264 291 - -
Gabi3731g00002 605 MobiDBLite consensus disorder prediction 358 374 - -
Gabi3731g00002 605 FunFam Trihelix transcription factor GT-2 421 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3731g00002 Gabi-Chr3731 37972 41194 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3731g00002 60 534 Trihelix Transcription Factor Family AT1G76880 57.800 1.04e-162 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gabi3731g00002 Myb_DNA-bind_4 6e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3731g00002 - - gmx:547624 589.341