Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3729g00057 ATGGGCGGTTGTTGTTGTTGTTGTTCTTCCAGAGAGACTGAATTGAGCGCTCCACCTCCATCCTACTATTACCCAAGAGTATCAGAGGAGCATGTCCCACTATCATCTCACCACGGTGCTGCCCCTTCTTTTTCGGGAGGGCTCTTAGTTGATACTAATCTAGACACTTCAAGTCCTGATATTTATAGACCGCCTCCTGCTCCTATCCCTTTCAATGGTACATTAGGTTTCACTCAAACTCCGCCTATGGCTCAAGAAATTTGTGAGGACAAGACTAATGCATCTCTGCTTACTACAAATTCTAATCCAATTCAAGAAACAGTTGCGGGGGACAATCATGGGACCTCAACTAAATCGGAAGAGCTGAAGGAATCAGATTGCAAAGTCCAGACTGCTTTTGAACTTGACACAGGAAAGGATTCTGAAATTGGACCTCCAAAGATGGCAGAAACTACTATTTTAGTGAAAGAGGAGGACGAATGCCCGATTTGTTTAGAAGAGTATGATGCAGAGAATCCAAAACTCTCCACAAAATGTGACCATCATTTTCACCTTGCCTGCATTCTAGAATGGATGGAAAGATGTGAAACCTGTCCTGTGTGTGATCAGGATACGGTCTTCAACCTTCCCATTGATTAA 639 0.4351 MGGCCCCCSSRETELSAPPPSYYYPRVSEEHVPLSSHHGAAPSFSGGLLVDTNLDTSSPDIYRPPPAPIPFNGTLGFTQTPPMAQEICEDKTNASLLTTNSNPIQETVAGDNHGTSTKSEELKESDCKVQTAFELDTGKDSEIGPPKMAETTILVKEEDECPICLEEYDAENPKLSTKCDHHFHLACILEWMERCETCPVCDQDTVFNLPID 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3729g00057 212 Pfam Ring finger domain 159 201 IPR001841 -
Gabi3729g00057 212 SUPERFAMILY RING/U-box 148 208 - -
Gabi3729g00057 212 ProSiteProfiles Zinc finger RING-type profile. 161 202 IPR001841 -
Gabi3729g00057 212 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 39 207 - -
Gabi3729g00057 212 FunFam Putative E3 ubiquitin-protein ligase RHB1A 138 206 - -
Gabi3729g00057 212 SMART ring_2 161 201 IPR001841 -
Gabi3729g00057 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 207 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3729g00057 Gabi-Chr3729 554765 557408 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3729g00057 1 212 C3H Transcription Factor Family AT5G41350 52.093 4.62e-70 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3729g00057 - - gmx:100816369 333.183