Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3729g00056 ATGCCTTCATGGTGGGGAAAGTCTTCGTCCAAAAAAGGGAACAGGAAAGAAAACAGGGAAAGTATTATTGAGACAATACAGCGGAAATTGAAAAGCACTTCTGGAGAGAAGCGCAATGATAAATCAAGAGGGTCTAGGAGACATCATAATGAGATTATTTCAGAAAAGGGATCTAGATCCCTTGAGCCTTCAAGATCATCATCACCCTCTACACACGTCTCCCGGTGTCAAAGTTTTGCACAAAGGCCTCGTGCGCAGCCACTTCCACTCCCAGGATTGCACCTTCCTTCTACCAATCATGCAAATTCTGGAATTAGTGTAACATCAAAACTGGAAAGCAATGGAGGCTCAAAACCATCACTATATTTTCCCCTACCAAAACCTGGTTATGTCTCTAACAGGGAAGAACCTGCAGATGCTGAGGGAGATATAGCCACTGCATCTGTTTCTAGTGGAAGCTCTACTGATAGTGATGACCAATCTGACTCACATTTCCTTAGTCCTGTGGCATCTGACTGTGAAAATGGAAACAGAACCACCATTCACGGTACCTTCAGTGTGGCGCACAATGATCAGTCACCTATTACTCTCCAAAAAAACTCAAGAGCGTCCTCAAAACCTGCTCCTCAATTGTGCAATCACCAGCTTATATCTAACTCACCTAAAATGGCTCCTTTACATCTGCCAAATCTGCAAATAGCTTGTTCAGGTGGTTTATGGAGTGCTCCAGATAGTTCAATGTCAAGTCCTTCTAGAAGTCCAGTGAGAACATTTGGTCTGGAGCAAGTTTTGAACTCTGGTTTATGTACAGGAAAGCTTTATTCAGATATAGCTTCTGGGCATTGCTCTAGTCCGGGTTCGGGCTATAATTCTGGGCATAATTCAGTTGGCGGAGATCTGTCGGGGCAGACATTTTGGATGCAGAGCAGGTGCAGCCCTGAGTGTTCTCCAATACCTAGTCCTGGAATGACAAGCCCCAGTCTCAGTTCCAGGATACACAGTGGTGCTGTCACCCCTCTTCATCCACGAGCTAGAGGTGCAGGAACACAATTGTCCACAAGACGTCCTGATGATGCAAAACAACGGACTCACCGATTACCACTTCCGCCGATAACAATCCCTAATTCATGTCCATTTTCTCCAACCTATTGTGCAACCACATCTACTTCAGCACCGCGTAGTCCTGGCATTTCAGAAAATATAACAAGCCCTGGTTCACGCTGGAAAAAGGGGCAACTGCTTGGAAGGGGGACATTTGGGCATGTATATCTAGGTTTTAACAGTGAAAGTGGTGAGATGTGTGCAATGAAGGAGGTAACCCTTTTTTCTGATGATGCTAAATCAAGGGAAAGTGAACAACAACTTGGCCAAGAAATTGCACTGCTAAGTCGCCTGCGGCATCCAAATATAGTCCAATATTATGGATCTGAGACGGTAGATGACAAACTTTATATATACTTGGAGTATGTCTCTGGTGGGTCAATCTATAAGTTGCTTCAACAATATGGCCAGCTTGGTGAAATTGCTATTCGTAATTATACTCGGCAAATTTTGTTAGGTCTTGCATATTTACATGCTAAAAACACTGTCCATAGAGACATTAAAGGAGCAAACATACTGGTGGATCCTAATGGGAGGGTAAAATTGGCAGATTTTGGGATGGCAAAGCATATAAGCGGGCAGTCCTGTCCATTATCTTTCAAAGGAAGTCCTTACTGGATGGCACCTGAGGTTATAAAAAATTCAAATGGTTGTAATCTTGCTGTTGATATATGGAGCCTTGGCTGCACTGTTTTGGAGATGGCTACGACAAAACCACCTTGGAGCCAATATGAAGGGGTTGCTGCTTTGTTTAAGATTGGGAACAGCAAGGAACTTCCTGCAATCCCAGATCGTCTATCAGAAGATGGAAAAGATTTTGTCAGGCTTTGCTTGCAAAGGAATCCACTATGTCGTCCCTCAGCTGCTCAACTTCTGATGCATCCATTTGTTAAAAAAGCCACACCAGAAAGGTCCGTTCTGTCTGCTGATCCTTCAGAAGCAACACCTGCTATTACAAATGCAGTGAGATCTCTGGCCATCGGACCGGCAAAACATAATTTATACATTGATTCAGAAGTGGCTGGTATCTATCTGTCTAGAAGCTTGAGAACTGGTTCAGGTTTAAGTGATACCCATATACCAAGGAACGTGTCACGTCCTGTGTCTCCTACTAGGAGCTCCCTTTTGCATTCTAGATCACTGCATATGAGTGGAAGGATGTCTCCCTCTCCAATATCAAGTCCTCATACTGCATCTGGCTCATCTACACCCCTCACCGGTGGTTGTGGTGCAATCCCATTTCATCAAACAAAACAGCCAACATTCTCGTTTGAAGGTGTCGGTGTGAGCCAAAGGACTCAAAATGGTCTTTATTCACATGGAAACACTGCTTATCAGGAGAGAAAAAATGAACCATTTTGGGGGATTCTGCAAACCGCTTATGCTTGCCCGGATATAGTTTCATCTAATAATGATGCTCTTGGAAACCATAATAGGAGGGCTGTCCAGGGAGTTCCAAGAGAATTTTATGATGGGAAGTCATATTTAACTGATTGTGTGTCACTACAGCTGTTAAGTGATCATGTAAGGTTAAATTCATCCCTAAATCTTAATCCTAATGCTCCATTGCTTTGTGCCACATAG 2685 0.4361 MPSWWGKSSSKKGNRKENRESIIETIQRKLKSTSGEKRNDKSRGSRRHHNEIISEKGSRSLEPSRSSSPSTHVSRCQSFAQRPRAQPLPLPGLHLPSTNHANSGISVTSKLESNGGSKPSLYFPLPKPGYVSNREEPADAEGDIATASVSSGSSTDSDDQSDSHFLSPVASDCENGNRTTIHGTFSVAHNDQSPITLQKNSRASSKPAPQLCNHQLISNSPKMAPLHLPNLQIACSGGLWSAPDSSMSSPSRSPVRTFGLEQVLNSGLCTGKLYSDIASGHCSSPGSGYNSGHNSVGGDLSGQTFWMQSRCSPECSPIPSPGMTSPSLSSRIHSGAVTPLHPRARGAGTQLSTRRPDDAKQRTHRLPLPPITIPNSCPFSPTYCATTSTSAPRSPGISENITSPGSRWKKGQLLGRGTFGHVYLGFNSESGEMCAMKEVTLFSDDAKSRESEQQLGQEIALLSRLRHPNIVQYYGSETVDDKLYIYLEYVSGGSIYKLLQQYGQLGEIAIRNYTRQILLGLAYLHAKNTVHRDIKGANILVDPNGRVKLADFGMAKHISGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAALFKIGNSKELPAIPDRLSEDGKDFVRLCLQRNPLCRPSAAQLLMHPFVKKATPERSVLSADPSEATPAITNAVRSLAIGPAKHNLYIDSEVAGIYLSRSLRTGSGLSDTHIPRNVSRPVSPTRSSLLHSRSLHMSGRMSPSPISSPHTASGSSTPLTGGCGAIPFHQTKQPTFSFEGVGVSQRTQNGLYSHGNTAYQERKNEPFWGILQTAYACPDIVSSNNDALGNHNRRAVQGVPREFYDGKSYLTDCVSLQLLSDHVRLNSSLNLNPNAPLLCAT 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3729g00056 894 CDD STKc_MEKK1_plant 407 664 - -
Gabi3729g00056 894 MobiDBLite consensus disorder prediction 96 116 - -
Gabi3729g00056 894 FunFam Mitogen-activated protein kinase kinase kinase 406 688 - -
Gabi3729g00056 894 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 64 674 - -
Gabi3729g00056 894 ProSiteProfiles Protein kinase domain profile. 408 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3729g00056 894 SUPERFAMILY Protein kinase-like (PK-like) 406 747 IPR011009 -
Gabi3729g00056 894 MobiDBLite consensus disorder prediction 10 58 - -
Gabi3729g00056 894 MobiDBLite consensus disorder prediction 59 81 - -
Gabi3729g00056 894 MobiDBLite consensus disorder prediction 146 178 - -
Gabi3729g00056 894 SMART serkin_6 408 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3729g00056 894 Pfam Protein kinase domain 409 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3729g00056 894 ProSitePatterns Protein kinases ATP-binding region signature. 414 437 IPR017441 GO:0005524
Gabi3729g00056 894 MobiDBLite consensus disorder prediction 338 371 - -
Gabi3729g00056 894 MobiDBLite consensus disorder prediction 1 120 - -
Gabi3729g00056 894 MobiDBLite consensus disorder prediction 722 772 - -
Gabi3729g00056 894 Gene3D Transferase(Phosphotransferase) domain 1 406 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3729g00056 Gabi-Chr3729 529195 535060 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3729g00056 1 886 MAP Kinase Kinase Kinase AT1G63700 60.444 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gabi3729g00056 Pkinase 6.7e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3729g00056 K20717 - gmx:100777350 1326.61