Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3729g00041 ATGGATGGGAGAGAAGCTATGGCATTCTCTGGTGGGTCTGCTCCATATTACATGCATAGAGGAGGGGTTGGTGGGTCTGGTCCTGGAACACAAACTGGAGGGTTCCAAGCACCCTCTGGGTTCAGAGCTTTGTCACATGACAGGTTTGGTTCTACATTTTCAGCAGAGCCTCAGCGTGCCAGTTTTATTCATGGCATTAGCATAGATTCCTCTCCTGTTCCTGTTCATGGAGTACCTTCTTCAGGTGAGCCTGTGAAAAAGAAAAGAGGGAGGCCTCGTAAGTATGGTCCTGATGGACCAGTTTCTTTGAGACTCTCTACAATGTCTGCCACTGCTGATTCCACTCCGGGCTCAACCACTCCTTCCCAGATACGGCGTAGAGGGCGCCCCCCTGGAAGTGGAAGGAAGCAACAGCTAGCCACACTTGGTGAATGGATGAACAGTTCTGCAGGAATGGCTTTTTCACCTCATGTTATCACCATTGGAGCTGGGGAGGACATTGTTGCAAAGTTATTATTGGTTTCACAGCAGAGACCAAGGGCTTTATGCATCTTGTCGGGAACTGGGACAGTTTCTTCAGTCACTCTGCGTCAGCCGGCTTCTACTACTGTCAGTGCTACTTATGAGGGCCGATTTCAAATATTATGCTTGTCTGGTTCTTACTTGGTTGCTGAAGATGGTGGACCTCGCAATAGAACAGGTGGCATGAGTGTTTCCCTTTCCAGTCCGGATGGTCATATTATTGGTGGTGGTATTGCTAGGCTTATCACTGCAAGCCCAGTACAGGTGGTAGTGTGCAGTTTCTTATATGGCGGGTCTAAGCCAAAGACTAAGGAAGGGACAAGTACAAAAGAAAGCAATTCGGAGCCTCAGAGTAGTGATAAGTTAGCTTCTCCTCCTAATCAAAACTACACCTCTTCTGCAACAGGCATGTGGCCAGTAGATACGAAAAGTGCACAGCCACACACTGGTATTGACTTGACTCGTGGGTGA 993 0.4844 MDGREAMAFSGGSAPYYMHRGGVGGSGPGTQTGGFQAPSGFRALSHDRFGSTFSAEPQRASFIHGISIDSSPVPVHGVPSSGEPVKKKRGRPRKYGPDGPVSLRLSTMSATADSTPGSTTPSQIRRRGRPPGSGRKQQLATLGEWMNSSAGMAFSPHVITIGAGEDIVAKLLLVSQQRPRALCILSGTGTVSSVTLRQPASTTVSATYEGRFQILCLSGSYLVAEDGGPRNRTGGMSVSLSSPDGHIIGGGIARLITASPVQVVVCSFLYGGSKPKTKEGTSTKESNSEPQSSDKLASPPNQNYTSSATGMWPVDTKSAQPHTGIDLTRG 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3729g00041 330 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 67 303 IPR039605 GO:0003680
Gabi3729g00041 330 MobiDBLite consensus disorder prediction 10 43 - -
Gabi3729g00041 330 Pfam Plants and Prokaryotes Conserved (PCC) domain 156 268 IPR005175 -
Gabi3729g00041 330 CDD DUF296 156 268 IPR005175 -
Gabi3729g00041 330 ProSiteProfiles PPC domain profile profile. 149 289 IPR005175 -
Gabi3729g00041 330 MobiDBLite consensus disorder prediction 104 126 - -
Gabi3729g00041 330 MobiDBLite consensus disorder prediction 284 330 - -
Gabi3729g00041 330 SUPERFAMILY AF0104/ALDC/Ptd012-like 153 272 - -
Gabi3729g00041 330 Gene3D - 156 287 - -
Gabi3729g00041 330 MobiDBLite consensus disorder prediction 68 137 - -
Gabi3729g00041 330 MobiDBLite consensus disorder prediction 276 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3729g00041 Gabi-Chr3729 420440 424367 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3729g00041 1 330 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 49.206 2.52e-96 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3729g00041 - - gmx:100790569 477.248