Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3729g00040 ATGGGAGAGAAGCTATGGCATTCTCTGGTGGGTCTGCTCCATATTACATGCATAGAGGAGGGGTTGGTGGGTCTGGTCCTGGAACACAAACTGGAGGGTTCCAAGCACCCTCTGGGTTCAGAGCTTTGTCACATGACAGGTGAGCCTGTGAAAAAGAAAAGAGGGAGGCCTCGTAAGTATGGTCCTGATGGACCAGTTTCTTTGAGACTCTCTACAATGTCTGCCACTGCTGATTCCACTCCGGGCTCAACCACTCCTTCCCAGATACGGCGTAGAGGGCGCCCCCCTGGAAGTGGAAGGAAGCAACAGCTAGCCACACTTGGTGAATGGATGAACAGTTCTGCAGGAATGGCTTTTTCACCTCATGTTATCACCATTGGAGCTGGGGAGGACATTGTTGCAAAGTTATTATTGGTTTCACAGCAGAGACCAAGGGCTTTATGCATCTTGTCGGGAACTGGGACAGTTTCTTCAGTCACTCTGCGTCAGCCGGCTTCTACTACTGTCAGTGCTACTTATGAGGGCCGATTTCAAATATTATGCTTGTCTGGTTCTTACTTGGTTGCTGAAGATGGTGGACCTCGCAATAGAACAGGTGGCATGAGTGTTTCCCTTTCCAGTCCGGATGGTCATATTATTGGTGGTGGTATTGCTAGGCTTATCACTGCAAGCCCAGTACAGGTGGTAGTGTGCAGTTTCTTATATGGCGGGTCTAAGCCAAAGACTAAGGAAGGGACAAGTACAAAAGAAAGCAATTCGGAGCCTCAGAGTAGTGATAAGTTAGCTTCTCCTCCTAATCAAAACTACACCTCTTCTGCAACAGGCATGTGGCCAGTAGATACGAAAAGTGCACAGCCACACACTGGTATTGACTTGACTCGTGGGTGA 888 0.4887 MGEKLWHSLVGLLHITCIEEGLVGLVLEHKLEGSKHPLGSELCHMTGEPVKKKRGRPRKYGPDGPVSLRLSTMSATADSTPGSTTPSQIRRRGRPPGSGRKQQLATLGEWMNSSAGMAFSPHVITIGAGEDIVAKLLLVSQQRPRALCILSGTGTVSSVTLRQPASTTVSATYEGRFQILCLSGSYLVAEDGGPRNRTGGMSVSLSSPDGHIIGGGIARLITASPVQVVVCSFLYGGSKPKTKEGTSTKESNSEPQSSDKLASPPNQNYTSSATGMWPVDTKSAQPHTGIDLTRG 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3729g00040 295 SUPERFAMILY AF0104/ALDC/Ptd012-like 118 238 - -
Gabi3729g00040 295 ProSiteProfiles PPC domain profile profile. 114 254 IPR005175 -
Gabi3729g00040 295 MobiDBLite consensus disorder prediction 241 295 - -
Gabi3729g00040 295 MobiDBLite consensus disorder prediction 48 102 - -
Gabi3729g00040 295 Gene3D - 121 252 - -
Gabi3729g00040 295 CDD DUF296 121 233 IPR005175 -
Gabi3729g00040 295 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 40 268 IPR039605 GO:0003680
Gabi3729g00040 295 MobiDBLite consensus disorder prediction 249 295 - -
Gabi3729g00040 295 Pfam Plants and Prokaryotes Conserved (PCC) domain 121 233 IPR005175 -
Gabi3729g00040 295 MobiDBLite consensus disorder prediction 69 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3729g00040 Gabi-Chr3729 420440 424367 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3729g00040 50 295 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 55.636 1.01e-88 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3729g00040 - - gmx:100790569 398.282