Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3729g00034 ATGAGCCAGACTGGGATGAGTACCTGCAATGACACTTCGACGCTCAAGTCAGTATCAAAGTCAGGCTTATGTGAGTCGTACGTAAGTGTTGCAATTCGAATGGCTTGGGATTGCATTAATAGGTTGCAGTGCTGTGGGAACCTATCACCTGAACCACACTATCCGTCGATGACAAGGTATCCGAAAGGCACGTCACATGAAGCAAAGAAGGTTGTTGAAGGATCAGAGTCGTCCAAAGTTGTTTTATGTGTTATGGGAATGACGTGTGCTGCTTGTGCTGGATCCGTTGAGAAAGCCATCAAGCGCTTACCTGGTATTCGAGAGGCCGTTGTTGATGTCTTGAATAATAAAGCCCAGGTTCTATACTATCCTGCTATGGTTCAAGAGGAGAGGATATGTGAGGCCATTGAAGATGCGGGATTTGAAGCCAAACTCATTGAAGAAGAATCCAATGACACCTCTTCTCAAATATGTCGAATACACATAAGGGGAATGACTTGTACTTCTTGCTCATCCACTGTTGAATCAGCTTTGCAAACCCTTCATGGGGTGCACAAAGCACGTGTGGCCTTGGCAACCGAAGAAGCTGAAGTCCGTTATGACCCTAACATTCTCACCTACAATCACCTAATGGAAGCTATACAAGACACTGGGTTTGAAGCCGTATTAATAAGCACAGGTGAACACATAACCAAGATAGAGCTTAAAATTGATGGCATTAAGAATGAGCAATCCTTGACTGCCATTGAACACTCTCTTCAGACACTCTCAGGTGTTGAAACCATAGACATATATCCAGAAATAAATAAAATTTCCATAACTTATAAACCATACATGACAGGACCAAGAACCTTCATTCAAGTCATAGAATCTACAGGATCTGGTTGTTTTAGAGCTGTGATATTCCCAAATGATGGAGGAAGAGAAACACATAGACAGGAGGAAATTAACCGATACTTCAAATTGTTCATATGGTGTTTGGTTTTCACCATTCCTGTTTTTCTGACATCCATGGTCCTTATGTATATACCTGGAGTTAAACATGTTTTGGATATCAAAGTTGTCAATATGCTGAGAATTGGACAACTCTTTAGGTTTGAATTTTCGACCCCAGTACAGTTTATCATAGGCAGGAGATTCTACATTGGGTCCTATAAAGCTTTGCGCCAAGGTTCTTCTAACATGGATGTGTTAATAGCCTTAGGAACAAATGCAGCCTACTTCTATTCTGTCTATGTTGTGGTAAGAGCTGCTTTCTGTCACCATTTCGAAGGCAATGATTTTTTTGAGACCAGCTCTATGCTTATTTCATTTATTCTGCTTGGAAAGTATTTGGAAGTTTTGGCAAAGGGGAAGACATCCCAGGCCATTGCCAAGCTTATGGACTTGACCCCTGAGACAGCAACCTTGTTAACTAAAGATGATGAAGGAAATGTCATTAGTGAACAACAAATTGATAGCCGTTTGATTCAAAAGAATGACGTGATCAAAATTGTTCCTGGTGCAAAAGTAGCCGCAGATGGTTTTGTCACATGGGGACAAAGCCACATAAATGAGAGCATGATAACTGGAGAGGCAAGGCCTGTGGCAAAGAGGAAGGGTGATATGGTGATTGGAGGCACTGTGAATGAGAATGGTGTTTTGCATGTCAAGGTAACAAGGGTTGGATCAGAGAGTGCCCTTTCCCAGATTGTTAGACTTGTTGAGTCTGCACAAATGGCTAAAGCTCCTGTTCAGAAACTTGCAGACCACATTTCTAAATATTTTGTTCCTCTAGTCATTGTGCTTTCTCTATCAACATGGCTTTCCTGGTTTCTAGCTGGAAAGTTACAAGCATACCCAAAATCCTGGATACCTTCCTCCATGAACAGCTTTGAGCTTGCACTTCAGTTTGGGATTTCTGTCATGGTCATAGCCTGCCCTTGTGCTCTAGGCCTTGCCACTCCTACAGCTGTCATGGTAGGTACTGGAGTTGGTGCAACTCAAGGTGTGTTGATCAAAGGGGGGCAAGCGTTAGAAAGTGCACACAAGGTGAATTGCATTGTGTTCGACAAGACAGGGACTCTCACAGTTGGGAAGCCAGTGGTTGTAACTACAAAACTCTTCAAAAAGATGTCACTAAGAGATTTCTACGAATTTGTTGCTGCAGCAGAGGTGAACAGCGAACATCCAATAGCCAAGGCTATTGTTGAGCACGCCAAGAAAATCATAGAAGATGAACAAAATCATTCCTGGCCAGAAGCACGAGACTTTGTTTCTGTTTCTGGCCATGGAGTGAAGGCCATAGTTCGAAACAAGGAAATAATGGTCGGGAACAAAAAATTGATGCTTGATCATAACGTAATCATTCCAGTGGATGCTGAAGAAATACTAGCAGAAGCTGAAAGACAAGCTCAAACTGGGATTTTAATATCCCTGGATGGAGAAATCGCCGGTGTTTTGGCAGTATCTGACCCATTGAAACCTGATGCCAAAGAAGTTATTTCCATTCTTAACTCCATGAAAATCAGGAGCATCATGGTAACAGGTGATAACTGGGGAACTGCCAATTCTATAGCCAGACAAGCTGGTATTGAAACTGTAATGGCAGAGGCTCAACCTGAAGCTAAAGCAAATAAAGTAAAAGATTTGCAGACTTGTGGCTACACTGTGGCAATGGTGGGAGATGGCATCAATGATTCACCAGCACTTGTAGCTGCTGATGTTGGAATGGCAATTGGTGCTGGCACAGACATAGCTATTGAAGCAGCTGACATTGTTCTCATGAAGAGCAACTTGGAGGATATAATAATTGCCATTGACCTTGCAAAGAAAACTTTCTCCCGTATACGTTTAAACTACATTTGGGCTCTGAGTTACAATCTGCTAGCCATCCCAATTGCTGCGGGCTTCCTTTACCCATCCACTAGATTCAGATTACCACCATGGATTGCTGGAGCTGCAATGGCTGCATCTTCTGTCAGTGTTGTTTGCTCCTCCCTCTTGTTAAAGAATTACAAGAGACCAAAGAAGCTAAACAACTCAGAGATAAATGGTATAAAGGTTGAATAA 3051 0.4241 MSQTGMSTCNDTSTLKSVSKSGLCESYVSVAIRMAWDCINRLQCCGNLSPEPHYPSMTRYPKGTSHEAKKVVEGSESSKVVLCVMGMTCAACAGSVEKAIKRLPGIREAVVDVLNNKAQVLYYPAMVQEERICEAIEDAGFEAKLIEEESNDTSSQICRIHIRGMTCTSCSSTVESALQTLHGVHKARVALATEEAEVRYDPNILTYNHLMEAIQDTGFEAVLISTGEHITKIELKIDGIKNEQSLTAIEHSLQTLSGVETIDIYPEINKISITYKPYMTGPRTFIQVIESTGSGCFRAVIFPNDGGRETHRQEEINRYFKLFIWCLVFTIPVFLTSMVLMYIPGVKHVLDIKVVNMLRIGQLFRFEFSTPVQFIIGRRFYIGSYKALRQGSSNMDVLIALGTNAAYFYSVYVVVRAAFCHHFEGNDFFETSSMLISFILLGKYLEVLAKGKTSQAIAKLMDLTPETATLLTKDDEGNVISEQQIDSRLIQKNDVIKIVPGAKVAADGFVTWGQSHINESMITGEARPVAKRKGDMVIGGTVNENGVLHVKVTRVGSESALSQIVRLVESAQMAKAPVQKLADHISKYFVPLVIVLSLSTWLSWFLAGKLQAYPKSWIPSSMNSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGATQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVTTKLFKKMSLRDFYEFVAAAEVNSEHPIAKAIVEHAKKIIEDEQNHSWPEARDFVSVSGHGVKAIVRNKEIMVGNKKLMLDHNVIIPVDAEEILAEAERQAQTGILISLDGEIAGVLAVSDPLKPDAKEVISILNSMKIRSIMVTGDNWGTANSIARQAGIETVMAEAQPEAKANKVKDLQTCGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDIIIAIDLAKKTFSRIRLNYIWALSYNLLAIPIAAGFLYPSTRFRLPPWIAGAAMAASSVSVVCSSLLLKNYKRPKKLNNSEINGIKVE 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3729g00034 1016 FunFam Probable copper-transporting ATPase HMA5 797 944 - -
Gabi3729g00034 1016 PRINTS P-type cation-transporting ATPase superfamily signature 518 532 - -
Gabi3729g00034 1016 PRINTS P-type cation-transporting ATPase superfamily signature 682 696 - -
Gabi3729g00034 1016 PRINTS P-type cation-transporting ATPase superfamily signature 812 823 - -
Gabi3729g00034 1016 PRINTS P-type cation-transporting ATPase superfamily signature 834 844 - -
Gabi3729g00034 1016 PRINTS P-type cation-transporting ATPase superfamily signature 910 922 - -
Gabi3729g00034 1016 PRINTS P-type cation-transporting ATPase superfamily signature 887 906 - -
Gabi3729g00034 1016 NCBIfam HAD-IC family P-type ATPase 435 969 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3729g00034 1016 ProSitePatterns E1-E2 ATPases phosphorylation site. 684 690 IPR018303 -
Gabi3729g00034 1016 FunFam ATPase copper transporting beta 152 226 - -
Gabi3729g00034 1016 CDD P-type_ATPase_Cu-like 323 983 - -
Gabi3729g00034 1016 Gene3D - 768 818 IPR023299 GO:0000166
Gabi3729g00034 1016 Gene3D - 689 767 IPR023299 GO:0000166
Gabi3729g00034 1016 Gene3D - 76 150 - -
Gabi3729g00034 1016 Gene3D - 155 226 - -
Gabi3729g00034 1016 SUPERFAMILY HAD-like 681 993 IPR036412 -
Gabi3729g00034 1016 SUPERFAMILY HMA, heavy metal-associated domain 155 228 IPR036163 GO:0046872
Gabi3729g00034 1016 CDD HMA 162 221 IPR006121 GO:0046872
Gabi3729g00034 1016 ProSitePatterns Heavy-metal-associated domain. 162 191 IPR017969 GO:0046872
Gabi3729g00034 1016 SUPERFAMILY Calcium ATPase, transmembrane domain M 428 959 IPR023298 -
Gabi3729g00034 1016 SUPERFAMILY HMA, heavy metal-associated domain 75 149 IPR036163 GO:0046872
Gabi3729g00034 1016 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 38 1011 - -
Gabi3729g00034 1016 SUPERFAMILY Calcium ATPase, transduction domain A 482 568 IPR008250 -
Gabi3729g00034 1016 PRINTS Copper-transporting ATPase signature 591 605 - -
Gabi3729g00034 1016 PRINTS Copper-transporting ATPase signature 380 399 - -
Gabi3729g00034 1016 PRINTS Copper-transporting ATPase signature 452 470 - -
Gabi3729g00034 1016 PRINTS Copper-transporting ATPase signature 432 451 - -
Gabi3729g00034 1016 PRINTS Copper-transporting ATPase signature 864 881 - -
Gabi3729g00034 1016 PRINTS Copper-transporting ATPase signature 960 974 - -
Gabi3729g00034 1016 NCBIfam heavy metal translocating P-type ATPase 395 996 IPR027256 GO:0006812|GO:0016020|GO:0019829
Gabi3729g00034 1016 ProSiteProfiles Heavy-metal-associated domain profile. 156 222 IPR006121 GO:0046872
Gabi3729g00034 1016 ProSiteProfiles Heavy-metal-associated domain profile. 78 144 IPR006121 GO:0046872
Gabi3729g00034 1016 Pfam Heavy-metal-associated domain 160 220 IPR006121 GO:0046872
Gabi3729g00034 1016 Pfam Heavy-metal-associated domain 84 142 IPR006121 GO:0046872
Gabi3729g00034 1016 SFLD p-type atpase 664 938 IPR044492 -
Gabi3729g00034 1016 FunFam Copper-transporting ATPase HMA5 77 148 - -
Gabi3729g00034 1016 SFLD Haloacid Dehalogenase 664 938 - -
Gabi3729g00034 1016 FunFam Copper-transporting ATPase 1, putative 450 572 - -
Gabi3729g00034 1016 PRINTS Copper-transporting ATPase 1 signature 134 154 - -
Gabi3729g00034 1016 PRINTS Copper-transporting ATPase 1 signature 180 201 - -
Gabi3729g00034 1016 PRINTS Copper-transporting ATPase 1 signature 79 104 - -
Gabi3729g00034 1016 PRINTS Copper-transporting ATPase 1 signature 105 128 - -
Gabi3729g00034 1016 Gene3D - 450 572 - -
Gabi3729g00034 1016 CDD HMA 84 144 IPR006121 GO:0046872
Gabi3729g00034 1016 Pfam haloacid dehalogenase-like hydrolase 678 901 - -
Gabi3729g00034 1016 Pfam E1-E2 ATPase 463 660 - -
Gabi3729g00034 1016 ProSitePatterns Heavy-metal-associated domain. 84 113 IPR017969 GO:0046872
Gabi3729g00034 1016 ProSiteProfiles Heavy-metal-associated domain profile. 231 297 IPR006121 GO:0046872
Gabi3729g00034 1016 Gene3D - 227 301 - -
Gabi3729g00034 1016 Gene3D - 649 944 IPR023214 -
Gabi3729g00034 1016 SUPERFAMILY HMA, heavy metal-associated domain 227 296 IPR036163 GO:0046872
Gabi3729g00034 1016 NCBIfam copper ion binding protein 160 221 IPR006122 GO:0005507
Gabi3729g00034 1016 NCBIfam copper ion binding protein 80 143 IPR006122 GO:0005507
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3729g00034 Gabi-Chr3729 385471 393029 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3729g00034 78 1016 Primary Pumps ATPases AT1G63440 73.807 0.0 1442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3729g00034 K17686 - gmx:100817431 1622.83