Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3729g00033 ATGGCCAAGTTGTTTGCGTTAGCTTGTCTCCGAAATGAAGGATGGGGTAACCTCTCGCCGCGACCTCACTACCCCTCCATGCCCCGCTACCCCAAGGGGGCTGCCACCACCGCCGACGTCGACGGTTCCGAGCTCACCGCCCTTTTCTCCGTCGTCGGAATGAGTTGCTCCGCCTGCGCTGGATCCGTCGAGAAATCCATCAAGCGCCTTTCCGGAATTCGCGAAGCCATCGTCGATGTCCTTAACAACCGTGCTCAGGTCCAATTTTACCCCTCCTTCGTTAACGAGGAGACCATTCGCGAGGCAATTGAAGATGCAGGGTTCGAAGCCACGTTACTCAGAGATGAGATGAATGACAAAGCTGTTCAACTATGCCGCATACAAATTAAGGGAATGACTTGCACATCGTGTTCCTCAACCGTTGAATCAGCTCTGCAAGCTATTCCAGGCGTGGTGAAAGCCCAAGTGGCCTTGGCAACAGAAGAAGCTGAAGTTCACTACAATACAAATGTTGTTAGCCACAACCAAATTTTACAAGCCATTGAAGACACTGGATTTCAAGCCGCGCTTATCAGTTCCAGTGAAGATTTGAGCAAGATAGACCTTCTGGTCGAAGGTTCACTCACCGATCATTCCCTGAAACTGATTGAAGACACTCTTCGGGCACTCCCGGGGGTCCTAGGTATAGATGTTGTTCCGGAATTGAACAAAATTTCGCTTTCTTATAAACCAGACATGACAGGACCTAGGAATTTCATTAACGTGATTGAGGAAACCGGGTCTGGGAATTTCAAGGCAAAAATATTTTCTGAAGAAGGAGGAGGACGAAGGGATACTCATAGAAGAGAGGAAATTAAACAATATCATAGATCTTTCTTATGGAGTTTGGTGTTTACCGTTCCTGTGTTTCTAACCTCTATGGTGTTTATGTATATCCCTGGAATTAAGGATGTGTTGGATGCCAAAGTTGTCAATATGCTCACAGTGGGGGAGGTTGCAAGATGGGTGCTTGCCACTCCAGTACAGTTCATTCTGGGATGGCGATTTTATTCTGGTTCCTACAAATCATTACGCCATGGCTCTGCCAACATGGATGTTCTGATCGCGTTGGGAACAAATGCAGCATACTTCTATTCAGTATACTCTGTCCTCAGAGCTGCTACCTCTCCAGATTTCGAGGGTAATGATTTCTTTGAGACTAGTGCCATGCTTATTTCATTCATTCTGCTTGGTAAGTATCTTGAGATTTTAGCCAAGGGGAAGACATCCGATGCAATTGCCAAGCTCATGAACTTGACCCCGGACACAGCTATATTGTTAACTTTGGACAATGAAGGGAATGTTATTGGTGAGCAAGAAATTGACGGCCGATTGGTTCAAAAGAATGATGCGATTAAAGTTATTCCTGGTGCAAAAGTAGCTTCGGACGGATTTGTTATATGGGGCCAGAGTCACGTGAATGAGAGCATGATTACAGGTGAGGCACGTCCCGTGGCAAAGAGGAAAGGCGACACTGTTATTGGAGGAACTGTGAATGAGAATGGAGTTTTGCATATTAAGGCAACACGGGTCGGATCGGAAAGTGCTCTTTCCCAGATTGTTCGACTTGTTGAGTCAGCACAAATGGCCAAGGCACCTGTGCAGAAGTTTGCTGATCGCATTTCGAAACACTTTGTGCCTCTGGTGATCTTAACCTCATGTACAACTTGGCTTGCCTGGTTTTTAGCTGGAAGATTTCATGCTTACCCGAAGTCTTGGATACCATCTTCCATCGACAGCTTTGAGCTTGCTTTGCAGTTTGGAATCTCTGTCATGGTCATAGCCTGCCCCTGTGCTTTAGGTTTAGCGACACCAACTGCTGTTATGGTTGGCACTGGAGTTGGTGCATCACAGGGTGTGCTGATCAAAGGAGGGCAAGCATTAGAAAGTGCTCATAAGGTGAACTGCATTGTTTTTGACAAGACAGGTACTCTCACCGTTGGGAAACCTGTGATAGTAAATACAAAACTATTTACAAAAATGGTACTCCCGGAATTCTACGAACTTGTGGCTGCAACTGAGGTGAATAGTGAGCATCCACTGGCTAAGGCCATTGTTGAGTATGCCAAAAAATTTAGAGATGAAGAGAACCCGTCTTGGCCGGAAGCACAGGATTTTGTATCTATTACTGGACATGGAGTAAAAGCCACTGTTCGCAACAAGGAAATAATTGTCGGTAATAAGAGCTTGATGGCCGACCATAAGGTCGCAATTCCTGGTGATGCTGAAGATATACTTGCTGAAGCGGAAAGGATGGCTCAAACGGGAATTTTAGTATCTATAAATGGGGAAGTAGCTGGGGTTTTAGCTGTTTCTGATCCATTGAAACCAGGTGCTCAAGAAGTCATTTCCATTCTCAAGTCTATGAAAATTAGGAGCATCATGGTGACTGGGGACAATTGGGGAACTGCGAATTCTGTCGCCAGGGAAGTTGGAATTGAAAGTGTTATTGCTGAGGCCAAACCTGAGCAGAAAGCTGAGAAAGTGAAAGACTTGCAGGCTTCAGGGTACACTGTGGCTATGGTGGGCGATGGTATCAATGATTCACCTGCACTTGTAGCAGCCGATGTGGGAATGGCAATAGGTGCTGGTACAGACATTGCCATTGAGGCGGCCGATATAGTCCTTATGAAGAGCAACTTGGAGGATGTCATAACTGCTATTGACCTTTCCAGAAAAACATTTTCCCGTATACGTCTGAATTACTTTTGGGCTTTGGGTTATAATCTTCTTGGCATCCCAATCGCTGCTGGAGCTCTTTTCCCTTCTACAAGGTTTCGATTGCCACCCTGGATTGCTGGGGCTGCTATGGCTGCTTCTTCTGTCAGTGTTGTTTGCTGTTCTCTGATGTTGAAATATTACAGGAGACCCCGGAAGCTGGACAACCTCGAGATACGGGGCATAAGGATCGAGCATCATCGGGTGAAATGA 2970 0.462 MAKLFALACLRNEGWGNLSPRPHYPSMPRYPKGAATTADVDGSELTALFSVVGMSCSACAGSVEKSIKRLSGIREAIVDVLNNRAQVQFYPSFVNEETIREAIEDAGFEATLLRDEMNDKAVQLCRIQIKGMTCTSCSSTVESALQAIPGVVKAQVALATEEAEVHYNTNVVSHNQILQAIEDTGFQAALISSSEDLSKIDLLVEGSLTDHSLKLIEDTLRALPGVLGIDVVPELNKISLSYKPDMTGPRNFINVIEETGSGNFKAKIFSEEGGGRRDTHRREEIKQYHRSFLWSLVFTVPVFLTSMVFMYIPGIKDVLDAKVVNMLTVGEVARWVLATPVQFILGWRFYSGSYKSLRHGSANMDVLIALGTNAAYFYSVYSVLRAATSPDFEGNDFFETSAMLISFILLGKYLEILAKGKTSDAIAKLMNLTPDTAILLTLDNEGNVIGEQEIDGRLVQKNDAIKVIPGAKVASDGFVIWGQSHVNESMITGEARPVAKRKGDTVIGGTVNENGVLHIKATRVGSESALSQIVRLVESAQMAKAPVQKFADRISKHFVPLVILTSCTTWLAWFLAGRFHAYPKSWIPSSIDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVIVNTKLFTKMVLPEFYELVAATEVNSEHPLAKAIVEYAKKFRDEENPSWPEAQDFVSITGHGVKATVRNKEIIVGNKSLMADHKVAIPGDAEDILAEAERMAQTGILVSINGEVAGVLAVSDPLKPGAQEVISILKSMKIRSIMVTGDNWGTANSVAREVGIESVIAEAKPEQKAEKVKDLQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYFWALGYNLLGIPIAAGALFPSTRFRLPPWIAGAAMAASSVSVVCCSLMLKYYRRPRKLDNLEIRGIRIEHHRVK 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3729g00033 989 NCBIfam HAD-IC family P-type ATPase 404 937 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3729g00033 989 CDD HMA 49 111 IPR006121 GO:0046872
Gabi3729g00033 989 FunFam Copper-transporting ATPase HMA5 44 115 - -
Gabi3729g00033 989 Gene3D - 618 912 IPR023214 -
Gabi3729g00033 989 SUPERFAMILY HMA, heavy metal-associated domain 194 261 IPR036163 GO:0046872
Gabi3729g00033 989 ProSitePatterns E1-E2 ATPases phosphorylation site. 653 659 IPR018303 -
Gabi3729g00033 989 Gene3D - 123 195 - -
Gabi3729g00033 989 ProSiteProfiles Heavy-metal-associated domain profile. 123 189 IPR006121 GO:0046872
Gabi3729g00033 989 CDD HMA 127 189 IPR006121 GO:0046872
Gabi3729g00033 989 Pfam Heavy-metal-associated domain 127 186 IPR006121 GO:0046872
Gabi3729g00033 989 Pfam Heavy-metal-associated domain 49 109 IPR006121 GO:0046872
Gabi3729g00033 989 FunFam Probable copper-transporting ATPase HMA5 765 912 - -
Gabi3729g00033 989 SUPERFAMILY Calcium ATPase, transmembrane domain M 399 926 IPR023298 -
Gabi3729g00033 989 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 4 982 - -
Gabi3729g00033 989 FunFam Copper-transporting ATPase HMA5 122 193 - -
Gabi3729g00033 989 SFLD p-type atpase 633 907 IPR044492 -
Gabi3729g00033 989 Pfam haloacid dehalogenase-like hydrolase 647 869 - -
Gabi3729g00033 989 CDD P-type_ATPase_Cu-like 290 965 - -
Gabi3729g00033 989 ProSitePatterns Heavy-metal-associated domain. 129 158 IPR017969 GO:0046872
Gabi3729g00033 989 NCBIfam copper ion binding protein 49 110 IPR006122 GO:0005507
Gabi3729g00033 989 NCBIfam copper ion binding protein 127 188 IPR006122 GO:0005507
Gabi3729g00033 989 SFLD C1.7: P-type atpase like 633 907 - -
Gabi3729g00033 989 ProSitePatterns Heavy-metal-associated domain. 51 80 IPR017969 GO:0046872
Gabi3729g00033 989 SUPERFAMILY HMA, heavy metal-associated domain 43 114 IPR036163 GO:0046872
Gabi3729g00033 989 PRINTS Copper-transporting ATPase 1 signature 46 71 - -
Gabi3729g00033 989 PRINTS Copper-transporting ATPase 1 signature 101 121 - -
Gabi3729g00033 989 PRINTS Copper-transporting ATPase 1 signature 72 95 - -
Gabi3729g00033 989 PRINTS Copper-transporting ATPase 1 signature 147 168 - -
Gabi3729g00033 989 FunFam Copper-transporting ATPase 1, putative 419 541 - -
Gabi3729g00033 989 Pfam E1-E2 ATPase 446 629 - -
Gabi3729g00033 989 SUPERFAMILY HAD-like 650 961 IPR036412 -
Gabi3729g00033 989 ProSiteProfiles Heavy-metal-associated domain profile. 198 264 IPR006121 GO:0046872
Gabi3729g00033 989 Gene3D - 42 112 - -
Gabi3729g00033 989 NCBIfam heavy metal translocating P-type ATPase 364 964 IPR027256 GO:0006812|GO:0016020|GO:0019829
Gabi3729g00033 989 Gene3D - 419 541 - -
Gabi3729g00033 989 SUPERFAMILY Calcium ATPase, transduction domain A 452 537 IPR008250 -
Gabi3729g00033 989 ProSiteProfiles Heavy-metal-associated domain profile. 45 111 IPR006121 GO:0046872
Gabi3729g00033 989 SUPERFAMILY HMA, heavy metal-associated domain 122 193 IPR036163 GO:0046872
Gabi3729g00033 989 Gene3D - 658 735 IPR023299 GO:0000166
Gabi3729g00033 989 Gene3D - 736 786 IPR023299 GO:0000166
Gabi3729g00033 989 PRINTS P-type cation-transporting ATPase superfamily signature 780 791 - -
Gabi3729g00033 989 PRINTS P-type cation-transporting ATPase superfamily signature 651 665 - -
Gabi3729g00033 989 PRINTS P-type cation-transporting ATPase superfamily signature 802 812 - -
Gabi3729g00033 989 PRINTS P-type cation-transporting ATPase superfamily signature 855 874 - -
Gabi3729g00033 989 PRINTS P-type cation-transporting ATPase superfamily signature 487 501 - -
Gabi3729g00033 989 PRINTS P-type cation-transporting ATPase superfamily signature 878 890 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3729g00033 Gabi-Chr3729 371883 376409 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3729g00033 3 985 Primary Pumps ATPases AT1G63440 75.806 0.0 1544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3729g00033 K17686 - gmx:100816893 1632.85