Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3729g00030 ATGAGGTTTCGTACTTCATTGTTGTTTCTCGGTTTTATTTCCACGCTCTCCCTTGTGGCTTCTGATACTCTGCCCTCAAATGAAGTTTGGGCGCTTACAAGCTTCAAAGAAGCTATCTATGAAGACCCATATGCAGTTTTATCCAATTGGAATACGCTGGACTCAGATCCTTGTTTCTGGTTTGGTATCGAATGCACAATGGCTCAAGATCATGTCATCAAGCTAAACATATCAGAATCATTACTAAAGGGGTTTCTTGCACCAGAGTTGGGACAAATTACCTTCTTGCAAGAACTAATTTTGCACGGCAACAATCTCATTGGAATAATACCTAAAGAGTTGGGAGTGTTGGAATCTCTCAAGGAGTTGGATTTGGGAATGAATCGGTTATCGGGACCAATTCCTCCAGAGATTGGGAATTTAACCCAAGTTGTGAGCATAAACCTGCAGTCTAACGGGTTGACTGGTAGGCTACCTCCTGAGCTTGGAAATTTGAGATACCTTCAAGAACTTCGGCTGGATAGGAATAAGCTTCAAGGACCTATTCCTGCTGGTGTCAGTTCGGATTTTGCTTCAAATATGTATGCATCAAACGAGAATATTACTGGCTTCTGTCTTTCGTCTCAATTAAAAGTAGCAGACTTTTCATATAATTTTTTAGTTGGTACCATACCCAAATGCTTGGAGTATCTTCCCAGGTTAAGCTTTCAAGGGAACTGCCTCCAGAGCAATGAATTAAATCAGCGGCCTTCCATGCAATGTGCTGGTGCTTCACCTGCCAAGAGCCAGCCAGTGGTGAACCAAAACCACCAACCTGCTGAATATGTGCCCAAGCATCACGGAGCACCAAAACCTGCTTGGCTTTTGGCTCTGGAAATAGTAGCGGGAACTATGGTTGGTTCTCTCTTCCTGGTTGCTGTTCTCGCTGCTTTTCAGAGGTGTAACAAAAAATCATCTATCATTATTCCTTGGAAAAAATCTGCAAGCCAGAAGGACCATATATATATAGACCCCGATGTGTTGAAGGATGTGAGAAGCTATAGCAGACAAGAGCTTGAAGTGGCCTGTGAAGACTTCAGCAACATAATTGGGTCCTCACCAGACAGTGTGGTCTACAAGGGAACCATGAAAGGTGGGCCTGAGATTGCTGTAATTTCCCTCTGCATCAAGGAGGAGTATTGGACAGGATATCTTGAACTCTATTTTCAGAGAGAGGTGGCAGACTTGGCAAGGTTAAATCATGAGAATACAGGAAAACTACTGGGCTATTGTAGAGAGAGCACTCCATTTACAAGGATGTTAGTTTATGAGTATGCTTCAAATGGGACACTTCATGATTACCTACATTATGAAGAAGGCTGCCAGTTCTCTTGGACACGGCGCATGAAAATTGCTATAGGCATTGCACGTGGACTCACGTATTTGCAATCAGAAGTTGAACCTCCATTTACTATCTCAGAGCTGAATTCTAGTGCTGTATACCTTACAGAAGAATTTTCTCCTAAGTTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAAAGATCAGAAAAGAATTCTTCTGGTTCTCTTGGCAGCCAAGGAGCTGTTTGTGTTCTTCCAAATTCCCTTGAGGCGCGACATCTTGATATCAAAGGAAACATATATGCTTTTGGGGTACTTCTACTGGAGTTAATCAGCGGGAGACCTCCATACTGTAGGAACAAAGGGTACTTGGTGGACTGGGCCAAGGACTATCTTGAAAAGCCAGAAGTAATGTCACAATTGGTGGATCCCGAATTGAAACATTTTAGATATGATGACCTCAAAGTGATATGTGAGGTAATAACTCTTTGTATCAATCCTGATACAACTTCATGTCCATCAATGCGAGAATTATGTAGCATGCTGGAGAGCAGAATTGACACATCAATAAGCGTGGAGCTCAAGTCATCATCTTTGGCTTGGGCTGAACTTGAACTTTTATCATAA 1971 0.4226 MRFRTSLLFLGFISTLSLVASDTLPSNEVWALTSFKEAIYEDPYAVLSNWNTLDSDPCFWFGIECTMAQDHVIKLNISESLLKGFLAPELGQITFLQELILHGNNLIGIIPKELGVLESLKELDLGMNRLSGPIPPEIGNLTQVVSINLQSNGLTGRLPPELGNLRYLQELRLDRNKLQGPIPAGVSSDFASNMYASNENITGFCLSSQLKVADFSYNFLVGTIPKCLEYLPRLSFQGNCLQSNELNQRPSMQCAGASPAKSQPVVNQNHQPAEYVPKHHGAPKPAWLLALEIVAGTMVGSLFLVAVLAAFQRCNKKSSIIIPWKKSASQKDHIYIDPDVLKDVRSYSRQELEVACEDFSNIIGSSPDSVVYKGTMKGGPEIAVISLCIKEEYWTGYLELYFQREVADLARLNHENTGKLLGYCRESTPFTRMLVYEYASNGTLHDYLHYEEGCQFSWTRRMKIAIGIARGLTYLQSEVEPPFTISELNSSAVYLTEEFSPKLVDFESWKTILERSEKNSSGSLGSQGAVCVLPNSLEARHLDIKGNIYAFGVLLLELISGRPPYCRNKGYLVDWAKDYLEKPEVMSQLVDPELKHFRYDDLKVICEVITLCINPDTTSCPSMRELCSMLESRIDTSISVELKSSSLAWAELELLS 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3729g00030 656 SUPERFAMILY Protein kinase-like (PK-like) 341 631 IPR011009 -
Gabi3729g00030 656 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Gabi3729g00030 656 Gene3D Ribonuclease Inhibitor 27 139 IPR032675 -
Gabi3729g00030 656 Pfam Protein tyrosine and serine/threonine kinase 361 629 IPR001245 GO:0004672|GO:0006468
Gabi3729g00030 656 PANTHER PROTEIN MALE DISCOVERER 2 10 656 - -
Gabi3729g00030 656 Gene3D Transferase(Phosphotransferase) domain 1 439 646 - -
Gabi3729g00030 656 ProSiteProfiles Protein kinase domain profile. 357 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3729g00030 656 FunFam Inactive receptor-like serine/threonine-protein kinase 332 438 - -
Gabi3729g00030 656 FunFam Nuclear pore complex protein NUP107 25 184 - -
Gabi3729g00030 656 SUPERFAMILY L domain-like 26 235 - -
Gabi3729g00030 656 Gene3D Phosphorylase Kinase; domain 1 330 438 - -
Gabi3729g00030 656 Gene3D Ribonuclease Inhibitor 140 260 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3729g00030 Gabi-Chr3729 363323 367625 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3729g00030 41 635 Receptor kinase-like Gene Family AT5G45780 28.007 2.83e-58 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Gabi3729g00030 PK_Tyr_Ser-Thr 1.9e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3729g00030 - - gmx:100794714 1105.89