Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3729g00029 ATGAGGTTTCGTACTTCATTGTTGTTTCTCGGTTTTATTTCCACGCTCTCCCTTGTGGCTTCTGATACTCTGCCCTCAAATGAAGTTTGGGCGCTTACAAGCTTCAAAGAAGCTATCTATGAAGACCCATATGCAGTTTTATCCAATTGGAATACGCTGGACTCAGATCCTTGTTTCTGGTTTGGTATCGAATGCACAATGGCTCAAGATCATGTCATCAAGCTAAACATATCAGAATCATTACTAAAGGGGTTTCTTGCACCAGAGTTGGGACAAATTACCTTCTTGCAAGAACTAATTTTGCACGGCAACAATCTCATTGGAATAATACCTAAAGAGTTGGGAGTGTTGGAATCTCTCAAGGAGTTGGATTTGGGAATGAATCGGTTATCGGGACCAATTCCTCCAGAGATTGGGAATTTAACCCAAGTTGTGAGCATAAACCTGCAGTCTAACGGGTTGACTGGTAGGCTACCTCCTGAGCTTGGAAATTTGAGATACCTTCAAGAACTTCGGCTGGATAGGAATAAGCTTCAAGGACCTATTCCTGCTGGTGTCAGTTCGGATTTTGCTTCAAATATGCATGGGATGTATGCATCAAACGAGAATATTACTGGCTTCTGTCTTTCGTCTCAATTAAAAGTAGCAGACTTTTCATATAATTTTTTAGTTGGTACCATACCCAAATGCTTGGAGTATCTTCCCAGGTTAAGCTTTCAAGGGAACTGCCTCCAGAGCAATGAATTAAATCAGCGGCCTTCCATGCAATGTGCTGGTGCTTCACCTGCCAAGAGCCAGCCAGTGGTGAACCAAAACCACCAACCTGCTGAATATGTGCCCAAGCATCACGGAGCACCAAAACCTGCTTGGCTTTTGGCTCTGGAAATAGTAGCGGGAACTATGGTTGGTTCTCTCTTCCTGGTTGCTGTTCTCGCTGCTTTTCAGAGGTGTAACAAAAAATCATCTATCATTATTCCTTGGAAAAAATCTGCAAGCCAGAAGGACCATATATATATAGACCCCGATGTGTTGAAGGATGTGAGAAGCTATAGCAGACAAGAGCTTGAAGTGGCCTGTGAAGACTTCAGCAACATAATTGGGTCCTCACCAGACAGTGTGGTCTACAAGGGAACCATGAAAGGTGGGCCTGAGATTGCTGTAATTTCCCTCTGCATCAAGGAGGAGTATTGGACAGGATATCTTGAACTCTATTTTCAGAGAGAGGTGGCAGACTTGGCAAGGTTAAATCATGAGAATACAGGAAAACTACTGGGCTATTGTAGAGAGAGCACTCCATTTACAAGGATGTTAGTTTATGAGTATGCTTCAAATGGGACACTTCATGATTACCTACATTGTTATGAAGAAGGCTGCCAGTTCTCTTGGACACGGCGCATGAAAATTGCTATAGGCATTGCACGTGGACTCACGTATTTGCAATCAGAAGTTGAACCTCCATTTACTATCTCAGAGCTGAATTCTAGTGCTGTATACCTTACAGAAGAATTTTCTCCTAAGTTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAAAGATCAGAAAAGAATTCTTCTGGTTCTCTTGGCAGCCAAGGAGCTGTTTGTGTTCTTCCAAATTCCCTTGAGGCGCGACATCTTGATATCAAAGGAAACATATATGCTTTTGGGGTACTTCTACTGGAGTTAATCAGCGGGAGACCTCCATACTGTAGGAACAAAGGGTACTTGGTGGACTGGGCCAAGGACTATCTTGAAAAGCCAGAAGTAATGTCACAATTGGTGGATCCCGAATTGAAACATTTTAGATATGATGACCTCAAAGTGATATGTGAGGTAATAACTCTTTGTATCAATCCTGATACAACTTCATGTCCATCAATGCGAGAATTATGTAGCATGCTGGAGAGCAGAATTGACACATCAATAAGCGTGGAGCTCAAGTCATCATCTTTGGCTTGGGCTGAACTTGAACTTTTATCATAA 1983 0.4231 MRFRTSLLFLGFISTLSLVASDTLPSNEVWALTSFKEAIYEDPYAVLSNWNTLDSDPCFWFGIECTMAQDHVIKLNISESLLKGFLAPELGQITFLQELILHGNNLIGIIPKELGVLESLKELDLGMNRLSGPIPPEIGNLTQVVSINLQSNGLTGRLPPELGNLRYLQELRLDRNKLQGPIPAGVSSDFASNMHGMYASNENITGFCLSSQLKVADFSYNFLVGTIPKCLEYLPRLSFQGNCLQSNELNQRPSMQCAGASPAKSQPVVNQNHQPAEYVPKHHGAPKPAWLLALEIVAGTMVGSLFLVAVLAAFQRCNKKSSIIIPWKKSASQKDHIYIDPDVLKDVRSYSRQELEVACEDFSNIIGSSPDSVVYKGTMKGGPEIAVISLCIKEEYWTGYLELYFQREVADLARLNHENTGKLLGYCRESTPFTRMLVYEYASNGTLHDYLHCYEEGCQFSWTRRMKIAIGIARGLTYLQSEVEPPFTISELNSSAVYLTEEFSPKLVDFESWKTILERSEKNSSGSLGSQGAVCVLPNSLEARHLDIKGNIYAFGVLLLELISGRPPYCRNKGYLVDWAKDYLEKPEVMSQLVDPELKHFRYDDLKVICEVITLCINPDTTSCPSMRELCSMLESRIDTSISVELKSSSLAWAELELLS 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3729g00029 660 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Gabi3729g00029 660 Gene3D Phosphorylase Kinase; domain 1 333 441 - -
Gabi3729g00029 660 Gene3D Transferase(Phosphotransferase) domain 1 442 650 - -
Gabi3729g00029 660 Gene3D Ribonuclease Inhibitor 25 262 IPR032675 -
Gabi3729g00029 660 Pfam Protein tyrosine and serine/threonine kinase 364 633 IPR001245 GO:0004672|GO:0006468
Gabi3729g00029 660 SUPERFAMILY Protein kinase-like (PK-like) 344 635 IPR011009 -
Gabi3729g00029 660 PANTHER PROTEIN MALE DISCOVERER 2 10 660 - -
Gabi3729g00029 660 ProSiteProfiles Protein kinase domain profile. 360 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3729g00029 660 FunFam Inactive receptor-like serine/threonine-protein kinase 335 441 - -
Gabi3729g00029 660 SUPERFAMILY L domain-like 26 238 - -
Gabi3729g00029 660 FunFam Nuclear pore complex protein NUP107 25 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3729g00029 Gabi-Chr3729 363323 367625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3729g00029 41 639 Receptor kinase-like Gene Family AT5G45780 27.869 1.77e-57 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Gabi3729g00029 PK_Tyr_Ser-Thr 3.2e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3729g00029 - - gmx:100794714 1126.69