Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3729g00021 ATGTTGGAGGTTAAAAAGGAGCTCGAGGATTTCGAATCTGATTCACCTCATAAAGATGGGCTCCATTTGTGTCTTTCTTCGCCCAATTGCAATTGCGATACCTCTCTTCTGAAATCAACACCTGTTGCAGGGAGAATAAAAGCCCAAGCTAGACGCTCGACAAAGGGATGCTGGACAGAGGAAGAGGACAACCTTTTGATTGAGACTGTGAAGAAGCACGATGGAAAGAACTGGAAGAAAATAGGTGGATGTGCTACATACCTCCCTGGGCGAACTGACGTCCAATGCTTGCATCGCTGGCAAAAGGTTTTAAATCCTGATCTTGTAAAGGGATCATGGACAGAGGAGGAGGATGATTGCCTCGTTGAGCTAGTCAGAAAGTATGGTTTAAAGAGATGGTCTGTTATTGCAAATTCCTTGCCAGGTCGTATTGGGAAGCAATGCAGAGAGAGGTGGCACAATCACCTTGATCCAGCTATAAAGAAGGATGCATGGACGGAGGAGGAGGAATCAGTACTTGCTTACTATCACCAAATATATGGCAGTAAATGGGCAAAAATTGCAAAGATTCTTCCTGGAAGGACTGACAATGCTATAAAAAATCATTGGAACTGCTTAATGAAGAAGAAATTGGATACATCCTCACCTTTTGGGTGTGACATGAAGGTTTCCACTTCCAGTTTCTGCGCTTCTCAAATAAAGCCAGCGCATGTGTTGGTCAAAGTTGAGGATCAAAGTTTCAATGGAATGGTGTCTCTCCAGCAGAGTCACTGGTTGAACCAGAGTGTTGATAACTTTCCAACAAAACTTGTTCTTCAAAATGCTTCTGGAGAGGAATTTTGCTCTAGAAAAAGCTGTTGTGAGGAGGGAACTCCTGGGGCCTCGAGACAAGGTGAAAGCAAACTGATTAATTTACCAAATGAGATAGACACTGTTACATGTTGCAAAGACCATACCAACCCTACTTGCACAATTAAATCTATGGAGTCGTCTTTGAATAATTCTCTGGACATGCTTACTAAAAATTTGGATTGTTTCCCTCTTGCCACAACTATTACTTATGAGGCCTATAAATCTCTCAAAAGGCAAAAGGTTTCTTCTTCGAATATAAAGTCTATTGTGGGTGACGAATCTGACAGCCCCCATTTGAGCTACTCAAAATCGTCTAATCGTGAGAAGAAAGATCAAGTTGGATGGGGAAGCAACAATAAAATCAACAGTATCCCAGAATCCGTACTAAGAAGCTTAGCAATGACCTATGAAAATATTCCCTCTATTATAAGGAAAAGAACTCCCAGTAAGGCAGGCAGTGCCAACTATTATGACAGTGCCCAAACACCATCGTCTGTACTTCTGAAGCAGAACATGTTATTGGTTTAG 1380 0.4196 MLEVKKELEDFESDSPHKDGLHLCLSSPNCNCDTSLLKSTPVAGRIKAQARRSTKGCWTEEEDNLLIETVKKHDGKNWKKIGGCATYLPGRTDVQCLHRWQKVLNPDLVKGSWTEEEDDCLVELVRKYGLKRWSVIANSLPGRIGKQCRERWHNHLDPAIKKDAWTEEEESVLAYYHQIYGSKWAKIAKILPGRTDNAIKNHWNCLMKKKLDTSSPFGCDMKVSTSSFCASQIKPAHVLVKVEDQSFNGMVSLQQSHWLNQSVDNFPTKLVLQNASGEEFCSRKSCCEEGTPGASRQGESKLINLPNEIDTVTCCKDHTNPTCTIKSMESSLNNSLDMLTKNLDCFPLATTITYEAYKSLKRQKVSSSNIKSIVGDESDSPHLSYSKSSNREKKDQVGWGSNNKINSIPESVLRSLAMTYENIPSIIRKRTPSKAGSANYYDSAQTPSSVLLKQNMLLV 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3729g00021 459 CDD SANT 58 104 IPR001005 -
Gabi3729g00021 459 ProSiteProfiles Myb-like domain profile. 50 104 IPR001005 -
Gabi3729g00021 459 ProSiteProfiles Myb-like domain profile. 105 156 IPR001005 -
Gabi3729g00021 459 MobiDBLite consensus disorder prediction 372 401 - -
Gabi3729g00021 459 FunFam Transcriptional activator Myb isoform A 110 162 - -
Gabi3729g00021 459 SUPERFAMILY Homeodomain-like 52 111 IPR009057 -
Gabi3729g00021 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 161 211 IPR017930 -
Gabi3729g00021 459 CDD SANT 112 156 IPR001005 -
Gabi3729g00021 459 ProSiteProfiles Myb-like domain profile. 157 207 IPR001005 -
Gabi3729g00021 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 104 IPR017930 -
Gabi3729g00021 459 Pfam Myb-like DNA-binding domain 162 204 IPR001005 -
Gabi3729g00021 459 Pfam Myb-like DNA-binding domain 55 104 IPR001005 -
Gabi3729g00021 459 Pfam Myb-like DNA-binding domain 110 156 IPR001005 -
Gabi3729g00021 459 PANTHER MYB PROTEIN-RELATED 55 129 - -
Gabi3729g00021 459 FunFam Transcriptional activator Myb isoform A 54 109 - -
Gabi3729g00021 459 Gene3D - 163 222 - -
Gabi3729g00021 459 CDD SANT 164 207 IPR001005 -
Gabi3729g00021 459 SUPERFAMILY Homeodomain-like 107 203 IPR009057 -
Gabi3729g00021 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 105 160 IPR017930 -
Gabi3729g00021 459 Gene3D - 54 109 - -
Gabi3729g00021 459 Gene3D - 110 161 - -
Gabi3729g00021 459 SMART sant 161 209 IPR001005 -
Gabi3729g00021 459 SMART sant 109 158 IPR001005 -
Gabi3729g00021 459 SMART sant 54 106 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3729g00021 Gabi-Chr3729 257639 261986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3729g00021 52 212 MYB Transcription Factor Family AT5G02320 70.186 6.80e-78 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3729g00021 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3729g00021 - - aprc:113869477 578.941