Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3729g00020 ATGGCGCCTATATCGGCGGAGCAGACCGGTGAATCAGCACCGGCAGACTCGCAGAGATCCGTTCCGACGCCGTTTCTGACGAAAACATTCCAGCTCGTGGATGATCCCTCTGCAGATGACCTAATTTCCTGGAACGATGATGGCACAAGCTTCATAGTTTGGCGACCAGCTGAATTCGCTCGAGATTTGCTTCCTAAGTATTTTAAACACAATAATTTTTCCAGTTTCGTCCGTCAGCTTAACACCTATGGATTTCGGAAGGTTGTCCCTGACCGCTGGGAATTTGCTAATGACTATTTCCGGCGAGGCGAGAAAGGCCTGCTTCGCGAAATACAGCGGCGGAAAATATTGCCGGTGACGGCGGGAGCAACGGCTAATACTGTAACGGTGGCTGTGGCGGCACCGGGCAGAACGGTGTCACCAACAACTTCGGGCGACGAACAGGTACTATCCTCGAACTCATCTCCGATTGCTGCGAATAATAGTAATACAGTGCACCGCACCACGAGTTGCACCACTGCGCCCGAGCTCTTAGAAGAGAATGAAAGGCTTAGGAAAGAGAACATGCAACTGAGTCACGAGTTGAGTCAATTGAAGGGTCTATGTAATAACATACTCGCCTTGATGACCAATTATGGTTCTGGTTTTAGCCGCCAACTAGAATCGTCTACTAGTGCTGTGAGGGCTGTACCTGTACCTGAAGGGAAAGCGTTGGAGTTTTTGCCTTCAAAGCATGTTTTATTAGCCGAGGATAATGCTGTGCATGTGAGTGGCGCTGGCGACACGGCGGAAGCAGAGGTTCCCAAGTTGTTTGGGGTTTCGATTGGGCATAAACGATGTAGGAGTAGGACAGAGAGCGAGAACGAGACCGAGAGAGAAGAACAGAATCAAACGCTAACGCAAACACGATCCTCTCAGGAACCAGATGATGTAAAATCTGAACCGCTTGATGGTGAGTACTCAGATGATCAGGAGCCTCGTTGGCTGGAGCTTGGAAATAACGCGCCTTCGTAA 1014 0.499 MAPISAEQTGESAPADSQRSVPTPFLTKTFQLVDDPSADDLISWNDDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDYFRRGEKGLLREIQRRKILPVTAGATANTVTVAVAAPGRTVSPTTSGDEQVLSSNSSPIAANNSNTVHRTTSCTTAPELLEENERLRKENMQLSHELSQLKGLCNNILALMTNYGSGFSRQLESSTSAVRAVPVPEGKALEFLPSKHVLLAEDNAVHVSGAGDTAEAEVPKLFGVSIGHKRCRSRTESENETEREEQNQTLTQTRSSQEPDDVKSEPLDGEYSDDQEPRWLELGNNAPS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3729g00020 337 MobiDBLite consensus disorder prediction 139 161 - -
Gabi3729g00020 337 MobiDBLite consensus disorder prediction 307 326 - -
Gabi3729g00020 337 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3729g00020 337 MobiDBLite consensus disorder prediction 277 337 - -
Gabi3729g00020 337 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3729g00020 337 Coils Coil 174 201 - -
Gabi3729g00020 337 MobiDBLite consensus disorder prediction 1 21 - -
Gabi3729g00020 337 FunFam Heat stress transcription factor B-4 17 115 - -
Gabi3729g00020 337 Gene3D - 17 115 IPR036388 -
Gabi3729g00020 337 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3729g00020 337 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3729g00020 337 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3729g00020 337 MobiDBLite consensus disorder prediction 278 296 - -
Gabi3729g00020 337 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3729g00020 337 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 307 IPR027725 -
Gabi3729g00020 337 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3729g00020 Gabi-Chr3729 250288 253184 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3729g00020 16 332 HSF AT4G11660 50.595 1.06e-96 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gabi3729g00020 HSF_DNA-bind 1.5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3729g00020 K09419 - gmx:100791020 483.026