Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3729g00017 ATGGCGACGACAAGGTCCCCGAGCCGTTCCTCCGAGGACATCGTCGATTCGACGCCGTTGCTGGCGAATTCCGGCGGCTCTTCCGGCGAAATTAATTCCGGGCGTCAAGTTGTTAGGAGACAGAGGCTTCGTCAAGCGGCGCGGTTCCTCCGGCAAGCGAGTGGGAGGACGATGCGCGAGCCGTCAATGTTGGTTCGAGAGACTGCGGCAGAGCAATTGGAGGAGAGACAGAGCGATTGGGCTTATTCGAAGCCCATCGTCATCCTCGATATCATTTGGAACTTCGCGTTCGTTGTTGTGGCAGCCACCGTGTTGATTTTGAGTCGAAGTGAAGCACCGGGAATGCCTCTTAGGTTTTGGATTGTGGGGTATGCTATGCAATGCATCCTTCACATGTTCTGTGTTTGCGTCGAGTATCGAAGACGGAGACGGCACCAACGTGCCTCATCCTTGAACGCAGTTGCAGGGCAAGACAGGGTTGGAAGTAGCAGTGGGAATTTGAGTTCCGCTTCAAGGGAGGCTTCTGGTTCTGGTTCTGGTTCTGGTTCTGCGCAGTATGCGTCATTGCCGCAATTAGCTCAGGAGGGTACTAGTGTTGCAAAGCATTTGGAATCTGCCAATACAATGTTTTCATTTATTTGGTGGATTATTGGATTCTACTGGGTATCAGCTGGTGGTCAAGCTTCAGCCCAAGATTCTCCTCAGCTTTACTGGCTATGTATAATCTTCCTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGTGTTGCACTGGCGTGTATCATTGGTGTCGCTGTTTGCTGTTGTCTTCCATGTATCATTGCACTTCTTTATGCAGTTGCAGACCAGGAAGGGGCACCAAAGGAAGACATTGAGCAGTTGTCAAAATTTAAATTCAGAATAGTTGAAAGTAGTGAGAAACTTACTGGTAATACACAAGAACCTGTTGGAGGAATAATGACCGAATGCCAGGCTGAGTCACCTATTGAACGTGTTCTTTCCGAGGAGGATGCGGAATGCTGCATCTGCCTTTCTTCTTATGAGGATGGGGTTGAACTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGCCTGTGTGGATAAGTGGCTCTATATTAATGCTACATGCCCCCTCTGCAAGTATAACATCTCGAAAAGTAGCAACCTCAATCAAGAAGTGTAG 1182 0.4856 MATTRSPSRSSEDIVDSTPLLANSGGSSGEINSGRQVVRRQRLRQAARFLRQASGRTMREPSMLVRETAAEQLEERQSDWAYSKPIVILDIIWNFAFVVVAATVLILSRSEAPGMPLRFWIVGYAMQCILHMFCVCVEYRRRRRHQRASSLNAVAGQDRVGSSSGNLSSASREASGSGSGSGSAQYASLPQLAQEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQASAQDSPQLYWLCIIFLGFDVFFVVFCVALACIIGVAVCCCLPCIIALLYAVADQEGAPKEDIEQLSKFKFRIVESSEKLTGNTQEPVGGIMTECQAESPIERVLSEEDAECCICLSSYEDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNISKSSNLNQEV 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3729g00017 393 MobiDBLite consensus disorder prediction 156 182 - -
Gabi3729g00017 393 Coils Coil 386 393 - -
Gabi3729g00017 393 ProSiteProfiles Zinc finger RING-type profile. 339 380 IPR001841 -
Gabi3729g00017 393 SMART ring_2 339 379 IPR001841 -
Gabi3729g00017 393 FunFam E3 ubiquitin-protein ligase At1g12760 325 390 - -
Gabi3729g00017 393 PANTHER TARGET OF ERK KINASE MPK-1 53 385 - -
Gabi3729g00017 393 SUPERFAMILY RING/U-box 329 386 - -
Gabi3729g00017 393 MobiDBLite consensus disorder prediction 1 35 - -
Gabi3729g00017 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 389 IPR013083 -
Gabi3729g00017 393 Pfam Ring finger domain 338 380 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3729g00017 Gabi-Chr3729 220355 227692 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3729g00017 1 387 C3H Transcription Factor Family AT1G68070 46.667 1.14e-116 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3729g00017 - - gmx:100790497 594.734