Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3729g00016 ATGGCGACGACAAGGTCCCCGAGCCGTTCCTCCGAGGACATCGTCGATTCGACGCCGTTGCTGGCGAATTCCGGCGGCTCTTCCGGCGAAATTAATTCCGGGCGTCAAGTTGTTAGGAGACAGAGGCTTCGTCAAGCGGCGCGGTTCCTCCGGCAAGCGAGTGGGAGGACGATGCGCGAGCCGTCAATGTTGGTTCGAGAGACTGCGGCAGAGCAATTGGAGGAGAGACAGAGCGATTGGGCTTATTCGAAGCCCATCGTCATCCTCGATATCATTTGGAACTTCGCGTTCGTTGTTGTGGCAGCCACCGTGTTGATTTTGAGTCGAAGTGAAGCACCGGGAATGCCTCTTAGGTTTTGGATTGTGGGGTATGCTATGCAATGCATCCTTCACATGTTCTGTGTTTGCGTCGAGTATCGAAGACGGAGACGGCACCAACGTGCCTCATCCTTGAACGCAGTTGCAGGGCAAGACAGGGTTGGAAGTAGCAGTGGGAATTTGAGTTCCGCTTCAAGGGAGGCTTCTGGTTCTGGTTCTGGTTCTGGTTCTGCGCAGTATGCGTCATTGCCGCAATTAGCTCAGGAGGGTACTAGCAGTGTTGCAAAGCATTTGGAATCTGCCAATACAATGTTTTCATTTATTTGGTGGATTATTGGATTCTACTGGGTATCAGCTGGTGGTCAAGCTTCAGCCCAAGATTCTCCTCAGCTTTACTGGCTATGTATAATCTTCCTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGTGTTGCACTGGCGTGTATCATTGGTGTCGCTGTTTGCTGTTGTCTTCCATGTATCATTGCACTTCTTTATGCAGTTGCAGACCAGGCAAGGGCACCAAAGGAAGACATTGAGCAGTTGTCAAAATTTAAATTCAGAATAGTTGAAAGTAGTGAGAAACTTACTGGTAATACACAAGAACCTGTTGGAGGAATAATGACCGAATGCCAGGCTGAGTCACCTATTGAACGTGTTCTTTCCGAGGAGGATGCGGAATGCTGCATCTGCCTTTCTTCTTATGAGGATGGGGTTGAACTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGCCTGTGTGGATAAGTGGCTCTATATTAATGCTACATGCCCCCTCTGCAAGTATAACATCTCGAAAAGTAGCAACCTCAATCAAGAAGTGTAG 1185 0.4861 MATTRSPSRSSEDIVDSTPLLANSGGSSGEINSGRQVVRRQRLRQAARFLRQASGRTMREPSMLVRETAAEQLEERQSDWAYSKPIVILDIIWNFAFVVVAATVLILSRSEAPGMPLRFWIVGYAMQCILHMFCVCVEYRRRRRHQRASSLNAVAGQDRVGSSSGNLSSASREASGSGSGSGSAQYASLPQLAQEGTSSVAKHLESANTMFSFIWWIIGFYWVSAGGQASAQDSPQLYWLCIIFLGFDVFFVVFCVALACIIGVAVCCCLPCIIALLYAVADQARAPKEDIEQLSKFKFRIVESSEKLTGNTQEPVGGIMTECQAESPIERVLSEEDAECCICLSSYEDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNISKSSNLNQEV 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3729g00016 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 390 IPR013083 -
Gabi3729g00016 394 SMART ring_2 340 380 IPR001841 -
Gabi3729g00016 394 SUPERFAMILY RING/U-box 330 387 - -
Gabi3729g00016 394 Pfam Ring finger domain 339 381 IPR001841 -
Gabi3729g00016 394 FunFam E3 ubiquitin-protein ligase At1g12760 326 391 - -
Gabi3729g00016 394 ProSiteProfiles Zinc finger RING-type profile. 340 381 IPR001841 -
Gabi3729g00016 394 MobiDBLite consensus disorder prediction 1 35 - -
Gabi3729g00016 394 PANTHER TARGET OF ERK KINASE MPK-1 53 386 - -
Gabi3729g00016 394 MobiDBLite consensus disorder prediction 156 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3729g00016 Gabi-Chr3729 220355 227692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3729g00016 1 388 C3H Transcription Factor Family AT1G68070 46.036 2.67e-114 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3729g00016 - - gmx:100790497 584.719