Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3729g00014 ATGGACGGAGAGGAGAGAGAAATTAGTGAGTACCAAGTTCTGGTGGATCGGTGTCGGAGCTTGGAGAAGAAACAGGCCAAGCTAAGGGAGCAGTTTGATGAACTGATGCAGGAGAAGAAGCTCATGGTAAGGGACGATGAAGAGGTGATCCAAGATTCAACCATGAGTTTTTTCTCCGGTTACTTCTTCACTGGGAGTCCCTATGCTAGCGTGTTGAAGTGCATAGGCCACGCCGTTCATGTCTACAGAGCTTCCTCCGGAGAGATCATATACTGGAATCACTCAGCGGAAACTCTGTATGGATGGAAGGACAACGAAATCATTGGACAAAGAGTAGATAAGTTCCTAATTAGTGAAGAATATTATGCACCTCTACAAAATATTCTGGAAAGATTGATCAAAGGAGAACCATGGTCTGGGCAGTTTCCCTTCAAGAAGAGGTCTGGTGAAGTATTCATGGCAATGGTAACAAAAACTCCACTTTATGAGGATGGGGAGCTTGTTGGTATTATCACTGTTTCTAGTGACGCAGCTGTATTTAACTCTATAGATTCAGAAAATCGAAGAACTTATCAATCTGGTGCTAATGGCCAACCTGGAGTACAGAGGTTAAACTTCAAAAGGATTCAATGACCTCCACGGCCATTGATTGCACCAATGCCACATATTGCATCCTCTGTTTCGAATCTGGCATCAAAGTTTCTCCCACGCCGGCATACAGATGACACAGTTTCCAGGAATACTTCAAAAGATGCAGATGATGAAAAATTAGAGAAGCTTAGCATCTATGAAACAAAACCTCATTCAAGACATCAAAATAAAGAGAATACAACTGTTGGGGAGGCCTCCGAGAAGGATGACTCTACTACTGGATTTGGCCGACCTTCTAAAATTGCAGCCAGAGTCCTTGCTAAACTTCAAATTGGGGGAAGTGGAAAATATGAGAAGGATAATGGAAGTCTTAATAATCATTGCACAACTGAAAATTCAGGAAGCAATAGAGTGAATAATGAAAATGATTCATCTGGAGGATCAGTGGCATTAACTCCACCCCACGATGTTGCTAAGGAAGTGGATGAGGAATTAAATCTCCGAAAGTGTAATTCTTTACTTGCTATGAAGATAGTAGATACACAAGTTTGTGCACAAAGAAATTCCAGTGTTTTCAAACATAGTTCTGCTAAACCTTTCTCAGGGGAGGGGTATGAATGTTTTGGTTCTCCCATTCCCGAAGACCCTTTGTTAAGATTACGTTGCCATTTTGATCCAAAGAAGTTGGAGCCAGAAGCTACAAATATGGTGATAGAAGATGAAGTGCAAAAGCAGCAAGAGGGGTTGCAATTGCCTATTTCAGGGGAGAGTGTAAGCAGCCATGAAAGTTCATCAAGCAAAGGAGATAATGAGTCAAACTCTGTTGTAGAATGTGAAATCCATTGGGAAGACCTTCAATTAGGACAGGAAATTGGACAAGGTTCTTATGCTGTTGTTTATCATGGAATTTGGAATGGATCGGATGTTGCCGTCAAGGTTTACTTCGGGAATGGATACACAGAGGAGACTTTACAAGACTACAAAAAAGAGATTGATATAATGAAGAGATTGAGACACCCTAATGTATTGCTTTTCATGGGGGCAGTATATTCGCAGGAAAGGCTTGCCATTGTGACAGAGTTATTACCTAGGGGAAGCCTTTTCAAAACTCTTCACAAGAACAATCAGGGTTTAGACAACAGAAGGCGTCTAAGGATGGCCCTTGATGTTGCTAGAGGTATGAATTATCTTCATCACAGAAATCCCCCAATTGTGCATAGAGACCTTAAGTCTTCTAACCTGCTTGTTGATAAAAACTGGACTGTGAAGGTTGGAGACTTTGGCCTGTCAAGGTTGAAGGATGCAACTTTATTGACTACAAAATCTGGAAGAGGCACCCCTCAATGGATGGCCCCTGAAATCCTTCGAAGTGAACCTTCCAATGAGAAGTCTGATGTGTTCAGTTTTGGTGTCATCCTCTGGGAACTAATGACTCAATCTATTCCATGGAAAAATTTGAATTTCTTTCAGGTTGTTGGAGTCGTAGGCTTTATGGATAGAAGACTGGACCTGCCGGAGGGGCTTGATCCCCTTGTAGCATCAATCATCGATGACTGCTGGCGAAGTGATCCAGAACAACGCCCATCGTTTGAAGAGTTAATACAGAGAATGATGTTCCTTGTCAACAGATTTTCAATTAGGAGAATTTCAGAATCCTAA 2250 0.4187 MDGEEREISEYQVLVDRCRSLEKKQAKLREQFDELMQEKKLMVRDDEEVIQDSTMSFFSGYFFTGSPYASVLKCIGHAVHVYRASSGEIIYWNHSAETLYGWKDNEIIGQRVDKFLISEEYYAPLQNILERLIKGEPWSGQFPFKKRSGEVFMAMVTKTPLYEDGELVGIITVSSDAAVFNSIDSENRRTYQSGANGQPGVQRLNFKRIQXPPRPLIAPMPHIASSVSNLASKFLPRRHTDDTVSRNTSKDADDEKLEKLSIYETKPHSRHQNKENTTVGEASEKDDSTTGFGRPSKIAARVLAKLQIGGSGKYEKDNGSLNNHCTTENSGSNRVNNENDSSGGSVALTPPHDVAKEVDEELNLRKCNSLLAMKIVDTQVCAQRNSSVFKHSSAKPFSGEGYECFGSPIPEDPLLRLRCHFDPKKLEPEATNMVIEDEVQKQQEGLQLPISGESVSSHESSSSKGDNESNSVVECEIHWEDLQLGQEIGQGSYAVVYHGIWNGSDVAVKVYFGNGYTEETLQDYKKEIDIMKRLRHPNVLLFMGAVYSQERLAIVTELLPRGSLFKTLHKNNQGLDNRRRLRMALDVARGMNYLHHRNPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKDATLLTTKSGRGTPQWMAPEILRSEPSNEKSDVFSFGVILWELMTQSIPWKNLNFFQVVGVVGFMDRRLDLPEGLDPLVASIIDDCWRSDPEQRPSFEELIQRMMFLVNRFSIRRISES 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3729g00014 749 SMART pas_2 66 134 IPR000014 -
Gabi3729g00014 749 FunFam Serine/threonine-protein kinase isoform 1 473 560 - -
Gabi3729g00014 749 Gene3D Transferase(Phosphotransferase) domain 1 561 742 - -
Gabi3729g00014 749 Gene3D Phosphorylase Kinase; domain 1 475 559 - -
Gabi3729g00014 749 ProSitePatterns Protein kinases ATP-binding region signature. 488 509 IPR017441 GO:0005524
Gabi3729g00014 749 Gene3D PAS domain 81 179 - -
Gabi3729g00014 749 FunFam PAS domain-containing protein tyrosine kinase family protein 560 748 - -
Gabi3729g00014 749 SUPERFAMILY Protein kinase-like (PK-like) 470 741 IPR011009 -
Gabi3729g00014 749 MobiDBLite consensus disorder prediction 445 468 - -
Gabi3729g00014 749 CDD PAS 87 176 IPR000014 -
Gabi3729g00014 749 CDD STKc_MAP3K-like 488 734 - -
Gabi3729g00014 749 MobiDBLite consensus disorder prediction 238 291 - -
Gabi3729g00014 749 ProSiteProfiles Protein kinase domain profile. 482 737 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3729g00014 749 NCBIfam PAS domain S-box protein 85 176 IPR000014 -
Gabi3729g00014 749 SUPERFAMILY PYP-like sensor domain (PAS domain) 69 176 IPR035965 -
Gabi3729g00014 749 ProSitePatterns Serine/Threonine protein kinases active-site signature. 601 613 IPR008271 GO:0004672|GO:0006468
Gabi3729g00014 749 Pfam PAS domain 85 176 IPR000014 -
Gabi3729g00014 749 MobiDBLite consensus disorder prediction 238 294 - -
Gabi3729g00014 749 Pfam Protein tyrosine and serine/threonine kinase 482 733 IPR001245 GO:0004672|GO:0006468
Gabi3729g00014 749 Coils Coil 11 41 - -
Gabi3729g00014 749 PRINTS Tyrosine kinase catalytic domain signature 642 652 IPR001245 GO:0004672|GO:0006468
Gabi3729g00014 749 PRINTS Tyrosine kinase catalytic domain signature 661 683 IPR001245 GO:0004672|GO:0006468
Gabi3729g00014 749 PRINTS Tyrosine kinase catalytic domain signature 705 727 IPR001245 GO:0004672|GO:0006468
Gabi3729g00014 749 PRINTS Tyrosine kinase catalytic domain signature 595 613 IPR001245 GO:0004672|GO:0006468
Gabi3729g00014 749 PRINTS Tyrosine kinase catalytic domain signature 556 569 IPR001245 GO:0004672|GO:0006468
Gabi3729g00014 749 SMART serkin_6 482 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3729g00014 749 MobiDBLite consensus disorder prediction 316 346 - -
Gabi3729g00014 749 ProSiteProfiles PAS repeat profile. 86 136 IPR000014 -
Gabi3729g00014 749 MobiDBLite consensus disorder prediction 311 350 - -
Gabi3729g00014 749 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 255 734 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3729g00014 Gabi-Chr3729 177315 187603 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3729g00014 1 740 MAP Kinase Kinase Kinase AT4G23050 44.929 0.0 609
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gabi3729g00014 PK_Tyr_Ser-Thr 3.4e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3729g00014 - - gmx:100813707 1166.76