Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3729g00004 ATGGCGTCATCATCTTCCAAGAGGCACCCACTGTATCATGGAATCCGGTGTCGGGGAGGAAAATGGGTGTCCGAAATACGGGAGCCACGTAAGGCTTCACGAATATGGCTTGGCACTTTCCCAACACCTGAGATGGCGGCTGCAGCCTATGACGTGGCGGCGTTGGCCTTGAAAGGTGACAATGCTGTTCTCAACATCCCTGACTCAATCCACAAGTATCAAATGGCTCTATCCAATTCTCCTGCTGACATACGCAGTGCTGCAACTGCTGCAGCCGCACTGATCAAAGCTGAAGCCACCAACAATAGTGCATCAATTAATGTAGCTCAGCCTGATAACGCTAACAATGGCACTAATAATAGTGTTCATAATAGCACTTCATGGTTTGAAAGTGATTTCATAGACGAGGAAGCCATATTCGCAATGCCAAGTTTGCTGGTTGACATGGCTGGGGGAATGCTACTGTCACCGCCCAGAATGAGCCCACCACCGTCGGACAACTCGCCTGAGAAGCCAGGAGGAGAAAGTTTGTGGAATTTCTTTTGA 546 0.4927 MASSSSKRHPLYHGIRCRGGKWVSEIREPRKASRIWLGTFPTPEMAAAAYDVAALALKGDNAVLNIPDSIHKYQMALSNSPADIRSAATAAAALIKAEATNNSASINVAQPDNANNGTNNSVHNSTSWFESDFIDEEAIFAMPSLLVDMAGGMLLSPPRMSPPPSDNSPEKPGGESLWNFF 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3729g00004 181 Gene3D AP2/ERF domain 11 68 IPR036955 GO:0003700|GO:0006355
Gabi3729g00004 181 SUPERFAMILY DNA-binding domain 11 69 IPR016177 GO:0003677
Gabi3729g00004 181 MobiDBLite consensus disorder prediction 156 181 - -
Gabi3729g00004 181 CDD AP2 10 69 IPR001471 GO:0003700|GO:0006355
Gabi3729g00004 181 Pfam AP2 domain 12 59 IPR001471 GO:0003700|GO:0006355
Gabi3729g00004 181 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 149 - -
Gabi3729g00004 181 ProSiteProfiles AP2/ERF domain profile. 11 67 IPR001471 GO:0003700|GO:0006355
Gabi3729g00004 181 SMART rav1_2 11 73 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3729g00004 Gabi-Chr3729 44417 44962 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3729g00004 2 180 AP2-EREBP Transcription Factor Family AT5G52020 51.381 1.97e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi3729g00004 AP2 2.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3729g00004 - - gmx:100811020 243.817