Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3729g00003 ATGAACTATGGATATGGGTACACCCAAAGTCACAAGTCAGAAGCATCTTCTTCCAGTGCTCACTCTGACGATGAAGTCATATTAGCGTCAGCGAGGCCAAAGAAACGAGCGGGGCGAAGAGTGTTCAAGGAAACGAGGCACCCGGTTTACCGAGGAGTGCGACGAAGGAACAAAAACAAGTGGGTTTGCGAGATGCGAGTGCCTAACGACAAGTCTAGGATTTGGTTGGGAACATACCCAACGCCTGAAATGGCTGCACGTGCACACGATGTTGCCGCGCTTGCACTTCGTGGAAAGTCAGCTTGTCTCAATTTCGCAGACTCCGTGTGGCGGTTGACGGTGCCAGCTTCAACTGATGCGGAGGAGATAAGAAGAGCGGCGGTGGAGGCTGCTGAATCATTTGCGGATGAGGGCAACAACAAGCTGGAGCAGCAGCAGCATAGTGTGAAGGATAGTATAGATGATTATGAAGTTTGCATGGTAATGGAAGATGCTAATAATAAGGCTATGCAACAAGAGGGGATGACTATGGATGAAGTTCCGCCGCCAGTGTCAGAATTTGAAGACTTGCATGATTTGCTTTTGCGTATTGCGGATGAGCCTTTGCTGTCTCCTCCTCCTCCTGCAAGAGATGGTGGGGACTGGAATGACGTGGACATACTTGATGCTGAGGTGTCACTATGGAACTTTTCTTTTTGA 699 0.4936 MNYGYGYTQSHKSEASSSSAHSDDEVILASARPKKRAGRRVFKETRHPVYRGVRRRNKNKWVCEMRVPNDKSRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSVWRLTVPASTDAEEIRRAAVEAAESFADEGNNKLEQQQHSVKDSIDDYEVCMVMEDANNKAMQQEGMTMDEVPPPVSEFEDLHDLLLRIADEPLLSPPPPARDGGDWNDVDILDAEVSLWNFSF 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3729g00003 232 CDD AP2 50 108 IPR001471 GO:0003700|GO:0006355
Gabi3729g00003 232 FunFam Ethylene-responsive transcription factor 2 48 107 - -
Gabi3729g00003 232 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Gabi3729g00003 232 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Gabi3729g00003 232 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 10 229 IPR045277 GO:0003700
Gabi3729g00003 232 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Gabi3729g00003 232 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Gabi3729g00003 232 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Gabi3729g00003 232 MobiDBLite consensus disorder prediction 1 39 - -
Gabi3729g00003 232 SUPERFAMILY DNA-binding domain 49 108 IPR016177 GO:0003677
Gabi3729g00003 232 MobiDBLite consensus disorder prediction 1 24 - -
Gabi3729g00003 232 Pfam AP2 domain 48 98 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3729g00003 Gabi-Chr3729 30073 30801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3729g00003 22 232 AP2-EREBP Transcription Factor Family AT1G12610 46.047 4.12e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi3729g00003 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3729g00003 - - gmx:100789097 276.559