Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3725g00004 ATGACCATGAAGTCTGAGTCACTGGATCATTGGAGGAATTACTTTAGCACTGCCAAGTCGTATGATATATTCGATATCATTCATCATTCCATCATGGTGGCAGCTTCGGATTTCCCCAAGGAGTTCAAGCTGAGGAGAGATGGGATTGCTGAGAGATTGTTCTCTTGCATGTTGACGACTAAATGTTTGGGGTGTGAAAGGGTGGATCATGAAGACGTTGATGATGGGCTTGCCCTTGAAGCAGGGTCAAGTGAAGATGTCCGTGAAGAGGTTTTGAGGATCGGAAACCTTCTTCTTAACTTTAAAGAAGAGTCGGACTCTGTCTTATTTGAGTCATTGAGGAGGCTCCAGCTGATGGAACTCAAAGTTGATCTTCTAGAGAAAACTAAGATTGGAAAGGCTGTCAATCCTCTCCGAAAGCATGGATCAAAGGATATTAGGCAACTCGCATCGACTCTTATTGATTGCTGGAAAGAAATGGTAGATGAGTGGTGCAAGGCTTCCACTACCACAGCTATTGCAGCTTCAGAAGGCACTCCAGATTCTGTAAATCCATCTGTTCCTATGGATGAAGGGGCTTTATTTCTTGCCCAAATTGGTTCAATTGAACTCTCACAGGATGATGTACAGTTCTTCGATGGCATGGATGATTATGAAAATCCTCAACAGAGTGGACAATTCAAGTCTGAGGCTTCCATTAAGCCATCCATCACTGCCAAGGACAGTAAGAGTCAGCAACCAAGGAAAAATGAGGTTGCTGTGAGGCTAAATAAACCAGAAACTGTTGATAATTTCCCTGTCAGACCCCCAAAATCAACTATGCAGCGAAAAAGCAATATGGAGCCAAAGATGCAGCCAAAAATAGAGAACAATACAATCCCAAAGAAGCCTCCCATGATTCAGAAAGATAAATCCAAGTTTTCAGATGAAGAAGCTGCAGTCCAAGTAAAACTAGAGGCCACTAAGAGGAAAATTCAGGAGCGTTATCAACGAGTTGAAAATGCTAAGAGGCAGAGGACAATACAAGTTCTGGAAATAAATGATCTCCCCAAGCAAGGGGGTGGCCAACGAAATTCACATTTCAAACCTGGGAATCACAATAGGCAGTGGGCCAATGCACGAAGATAG 1128 0.4317 MTMKSESLDHWRNYFSTAKSYDIFDIIHHSIMVAASDFPKEFKLRRDGIAERLFSCMLTTKCLGCERVDHEDVDDGLALEAGSSEDVREEVLRIGNLLLNFKEESDSVLFESLRRLQLMELKVDLLEKTKIGKAVNPLRKHGSKDIRQLASTLIDCWKEMVDEWCKASTTTAIAASEGTPDSVNPSVPMDEGALFLAQIGSIELSQDDVQFFDGMDDYENPQQSGQFKSEASIKPSITAKDSKSQQPRKNEVAVRLNKPETVDNFPVRPPKSTMQRKSNMEPKMQPKIENNTIPKKPPMIQKDKSKFSDEEAAVQVKLEATKRKIQERYQRVENAKRQRTIQVLEINDLPKQGGGQRNSHFKPGNHNRQWANARR 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3725g00004 375 Coils Coil 315 338 - -
Gabi3725g00004 375 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 80 175 IPR035441 -
Gabi3725g00004 375 Pfam TFIIS helical bundle-like domain 113 161 IPR017923 -
Gabi3725g00004 375 MobiDBLite consensus disorder prediction 217 243 - -
Gabi3725g00004 375 MobiDBLite consensus disorder prediction 271 286 - -
Gabi3725g00004 375 CDD TFIIS_I 89 162 - -
Gabi3725g00004 375 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 88 169 IPR035441 -
Gabi3725g00004 375 MobiDBLite consensus disorder prediction 216 308 - -
Gabi3725g00004 375 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 363 IPR044805 -
Gabi3725g00004 375 MobiDBLite consensus disorder prediction 346 375 - -
Gabi3725g00004 375 MobiDBLite consensus disorder prediction 352 375 - -
Gabi3725g00004 375 SMART TFS2_5 91 163 IPR003617 GO:0005634
Gabi3725g00004 375 ProSiteProfiles TFIIS N-terminal domain profile. 89 164 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3725g00004 Gabi-Chr3725 46155 48623 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gabi3725g00004 Med26 2.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3725g00004 - - gmx:100775579 433.721