Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3725g00001 ATGGGAAGGCAACCTTGTTGTGATAAGGTTGGTTTGAAGAGAGGTCCATGGACAATTGAGGAAGATCATAAGCTTATGAATTTCATCCTCAACAATGGTATCCACTGTTGGAGAACAGTTCCAAAGCTTGCAGGTTTGCTAAGATGTGGAAAGAGCTGCAGATTGAGATGGATTAATTATCTGAGGCCAGACCTCAAGAGAGGTGGATTTACAGAAATGGAAGAGGATCAAATAATAGAACTACATTCAAGACTTGGTAATAGGTGGTCTAAGATTGCTACACATTTTCCAGGGAGGACTGACAATGAAATCAAGAACCATTGGAACACAAGAATCAAGAAGAGGTTGAAGCTCCTTGGTCTGGACCCTATGATGATCCAGAAGCCAATTGAGCAAAAGGAAAATTCTGATGATGACAAAAATAAGACAGGCCTAATGCAAAATACTTCAGAAGGGTGTGAAGAAGGTGTGGAGAATAAGTTCTTGGACATTCATGGCATAGAAGAAATGCCAAAAACAGAAGAGAAAAGAGAAGAAAACAAGGTGAATTGGGATGATACCACTGGAGTTTTAAACAATAATGAAATGCTATGCTCACAGTTGGACATGGGATTGTGGATGAGTCAAGAAACCAAAACCAATACTAGTTCTTGTTGTAGTTCTTCTTTCTCTCTGGATGATTCTAGCAACCTTTCTATAGGTGAATCCTCTTTCCTTCAGGAAAAATCCTTACAGCAATGGGTTGATGATTTGGACTCCATTCTCTCATGGGATAGCTTCAGTCCTCTTGAAAAGGATATTTTCTTCATGGAAAATAGGCAATAA 825 0.3927 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIHCWRTVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIELHSRLGNRWSKIATHFPGRTDNEIKNHWNTRIKKRLKLLGLDPMMIQKPIEQKENSDDDKNKTGLMQNTSEGCEEGVENKFLDIHGIEEMPKTEEKREENKVNWDDTTGVLNNNEMLCSQLDMGLWMSQETKTNTSSCCSSSFSLDDSSNLSIGESSFLQEKSLQQWVDDLDSILSWDSFSPLEKDIFFMENRQ 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3725g00001 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi3725g00001 274 Gene3D - 11 67 - -
Gabi3725g00001 274 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi3725g00001 274 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi3725g00001 274 CDD SANT 16 61 IPR001005 -
Gabi3725g00001 274 Gene3D - 69 148 - -
Gabi3725g00001 274 MobiDBLite consensus disorder prediction 130 152 - -
Gabi3725g00001 274 FunFam MYB transcription factor 68 130 - -
Gabi3725g00001 274 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi3725g00001 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi3725g00001 274 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi3725g00001 274 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Gabi3725g00001 274 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 224 - -
Gabi3725g00001 274 CDD SANT 70 110 IPR001005 -
Gabi3725g00001 274 SMART sant 66 114 IPR001005 -
Gabi3725g00001 274 SMART sant 13 63 IPR001005 -
Gabi3725g00001 274 FunFam MYB transcription factor 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3725g00001 Gabi-Chr3725 9947 11022 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3725g00001 1 169 MYB Transcription Factor Family AT1G66230 63.953 1.33e-72 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3725g00001 Myb_DNA-binding 8.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3725g00001 K09422 - gmx:100819471 468.388