Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3724g00003 TTTCAGAAGACGGAAAACCATAGAGTTTGCTTTGGAAAACCAGGTATTCATGGATGGGGCCTCTTTGCACGAAGAGAATTACAAGAAGGAGAAATGGTTGTTGAATATCGTGGTGAGCAGGTAAGGCGTAGTGTTGCTGATATGAGGGAAGCAAGGTACCGTTCAGAAGGCAAAGATTGTTATCTATTCAAGATTAGCGAGGAAGTGGTAATTGATGCAACGGATAAGGGCAATATTGCACGTTTAATAAACCATTCTTGCACGCCAAACTGCTTTGCAAGGATTATGTGTTTGGGTGATCAGGAGAGCCGGATTGTTCTTATTGCCAAGACCAATGTTTCTGTTGGTGTAGAACTAACGTATGACTACTTGTTCGATCCAGACGAACGGGATGAACTCAAGGTTCCCCTGCCTCTGTAA 420 0.4333 FQKTENHRVCFGKPGIHGWGLFARRELQEGEMVVEYRGEQVRRSVADMREARYRSEGKDCYLFKISEEVVIDATDKGNIARLINHSCTPNCFARIMCLGDQESRIVLIAKTNVSVGVELTYDYLFDPDERDELKVPLPL 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3724g00003 139 SUPERFAMILY SET domain 1 128 IPR046341 -
Gabi3724g00003 139 FunFam Histone-lysine N-methyltransferase 1 138 - -
Gabi3724g00003 139 Pfam SET domain 18 123 IPR001214 GO:0005515
Gabi3724g00003 139 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 8 132 IPR044570 GO:0042800|GO:0051568
Gabi3724g00003 139 CDD SET_SETD1-like 2 134 - -
Gabi3724g00003 139 SMART set_7 7 130 IPR001214 GO:0005515
Gabi3724g00003 139 Gene3D SET domain 1 131 IPR046341 -
Gabi3724g00003 139 ProSiteProfiles SET domain profile. 7 124 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3724g00003 Gabi-Chr3724 57479 60387 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3724g00003 18 123 C2H2 Transcription Factor Family AT2G23740 34.426 2.83e-13 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi3724g00003 SET 2.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3724g00003 - - dzi:111287640 256.144