Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3723g00001 ATGGCTATTCTACCGTTCATGCTTGTTATTGCTAACCTACTTTTGTTTGTCTCTCAAATTTCCTCTGAAACTGATACCATTACCCAGTTTCAGTCTCTTCCTGATGGAAGTTCATTGGTTTCACAGGATGGAACTTTTGAGTTTGGTTTCTTTAGTCCGGGTAGTTCCAAAAACCGCTATGTAGGAATCTGGTTCAAAAATATCTCTGTACAAACTGTTGTTTGGGTTGCCAACCGTGACAATCCAATCAAAGACAACTCAAGCAAGTTGAGCATAAGCAAAGAGGGAAACCTTGTCCTTCTCAGCAAGAATGGCACAGTTCATTGGTCAACAAATGCAACAACAAAAGGGTTAAGTGTCATAGCACAACTCTTAGGTTCTGGCAACTTGGTTCTAAAAGACGAGAAAGACAATAGTCCTCAAAACTACTTGTGGCAGAGCTTTGACTATCCCTCTGATACATGTTTGCCAGGAATGAAGTTAGGATGGAACCTAACGAGTGGCCTTAACAGGCGTTTAACTGCTTGGAAGAATTGGGATGACCCTTCTTCTGGTGAATTGAATTATGGCCTCTCACTAAGCAATAATCCTGATTTGGAGATTTGGAATCGCTCATCAATGATCTACAGAAGTGGACCTTGGAATGGCATTAGATTTAGCGGTACAAAAACAGCAAAGCAACTTCAATTGTTCAATGTAGATTTTGTGAGCAAAAGCGACGAGTATTATTTCAGCTACAAACCAAGGTATGACCAGTCATTGATTACAAGAATTGTCATCAACCAAACCACTTTTTCTCTTCAGCGCTTCACGTGGAATGAAACAAATCAAAAGTGGATGCAGTACTTAAATGTACCAAGAGATGACTGTGACAACTATAAGCGTTGTGGGTCATTCGGGAACTGTAAAATGACGGATAAGTCCCCAATATGCGAGTGTTTACAAGGATTCAAGGCAAAGTGGCCTCAAAACTGGAGTGAAGGATGTGTGCGCAGTGAAACTTGGAGCTGTAGGGATAAGAATAAAGATGGTTTCACCAAATTTAATAACTTGAAGGTCCCAGACACTAAAAAATCTTGGCTTGATAGAAGAATGACACTTGAGCAATGCAAGGCCAGATGCTGGGAAAGTTGTAACTGTACGGCTTATGCAAACTCAGACATCACTGGAGAAGGAAGTGGTTGTGTCCTCTGGTTCGGTGATCTATTGGATTTGAGACAGCTTCCAGATGCTGGGCAAGATCTGTATGTTAGATTAGCTCCTTCCGAAATAGGGATCATCAAGACAAAAGTAAAGAAAAACGAAAGCAAAGAAGATATGGAATTACCTTTGTTTGACATTGATACTATAGCGTGTGCCACTGATGACTTCTCAAGTGACAAGAAGCTTGGCGAAGGTGGATTTGGTCCTGTATATAGAGGCACACTCCCAGATGGACAGGATGTCGCTGTCAAACGGCTTTCACAAAAATCTACACAAGGATTAAAAGAATTTAAGAATGAGGTTATATTTTGTTCCAAACTTCAACACAGGAACCTTGTTAAAGTCCTAGGTTATTGCGTTGAAGAACAGGAGAAATTACTCATCTATGAATACATGCCAAACAAAAGTCTAGACTTCTTTCTTTTTGATTCTTCCCGAAGTGAACTTCTAGATTGGTCTAAGCGGTTCAACATTATAACTGGAATTGCTCGCGGGCTTCTTTACCTTCATCAAGACTCCAGATTAAGGATTATACATAGAGATTTAAAAGCAAGTAATATTTTATTGGATAGTGATATGAACCCGAAAATTTCTGATTTTGGCTTGGCGCGAATGTGTGAAGATGATCAGATTGAAGGTACCACAAGCAGAGTCATTGGTACATATGGCTATATGGCACCTGAATATGCAATTGATGGAATATTCTCCATCAAATCTGATGTATTCAGCTTCGGCATTCTATTACTTGAGGTTTTAAGCGGAAAGAAAAATAAAGGATTTTCCTATTCAAACCACACCTATAATCTTATTGCGCATGCATGGAGATTGTGGAAAGACAGCATCCCACCGGAATTCATTGATACTTGTTTGGGGGGCTCGTATTTTACATCTGAAGCCGTACGATGCATTCATATTGGTCTTTTATGTGTGCAATATCTTCCTGAGGATAGGCCAAATATGACAACTGTAGTTGTAATGTTAACCAGCGAAAGTGCTTTACCTCAACCAAAAGAGCCTGTCTTCTTAATGGAAAAGGTTACTGTTGAGGAAAAATATAGTTATGGCCTGAAGACGTACTGTTCAACCAATCAAGTATCTATTTCAGAGTTTGAGCCCAGGTTGGGAACAATTGAGGTAATCTTGAAAAATCAAGCTTCAGAGTGA 2367 0.3975 MAILPFMLVIANLLLFVSQISSETDTITQFQSLPDGSSLVSQDGTFEFGFFSPGSSKNRYVGIWFKNISVQTVVWVANRDNPIKDNSSKLSISKEGNLVLLSKNGTVHWSTNATTKGLSVIAQLLGSGNLVLKDEKDNSPQNYLWQSFDYPSDTCLPGMKLGWNLTSGLNRRLTAWKNWDDPSSGELNYGLSLSNNPDLEIWNRSSMIYRSGPWNGIRFSGTKTAKQLQLFNVDFVSKSDEYYFSYKPRYDQSLITRIVINQTTFSLQRFTWNETNQKWMQYLNVPRDDCDNYKRCGSFGNCKMTDKSPICECLQGFKAKWPQNWSEGCVRSETWSCRDKNKDGFTKFNNLKVPDTKKSWLDRRMTLEQCKARCWESCNCTAYANSDITGEGSGCVLWFGDLLDLRQLPDAGQDLYVRLAPSEIGIIKTKVKKNESKEDMELPLFDIDTIACATDDFSSDKKLGEGGFGPVYRGTLPDGQDVAVKRLSQKSTQGLKEFKNEVIFCSKLQHRNLVKVLGYCVEEQEKLLIYEYMPNKSLDFFLFDSSRSELLDWSKRFNIITGIARGLLYLHQDSRLRIIHRDLKASNILLDSDMNPKISDFGLARMCEDDQIEGTTSRVIGTYGYMAPEYAIDGIFSIKSDVFSFGILLLEVLSGKKNKGFSYSNHTYNLIAHAWRLWKDSIPPEFIDTCLGGSYFTSEAVRCIHIGLLCVQYLPEDRPNMTTVVVMLTSESALPQPKEPVFLMEKVTVEEKYSYGLKTYCSTNQVSISEFEPRLGTIEVILKNQASE 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3723g00001 788 PIRSF SRK 1 437 IPR024171 GO:0004674
Gabi3723g00001 788 PIRSF SRK 424 774 IPR024171 GO:0004674
Gabi3723g00001 788 SUPERFAMILY Protein kinase-like (PK-like) 442 750 IPR011009 -
Gabi3723g00001 788 Gene3D - 17 148 IPR036426 -
Gabi3723g00001 788 CDD PAN_AP_plant 336 420 - -
Gabi3723g00001 788 CDD B_lectin 31 151 IPR001480 -
Gabi3723g00001 788 ProSitePatterns Serine/Threonine protein kinases active-site signature. 578 590 IPR008271 GO:0004672|GO:0006468
Gabi3723g00001 788 Pfam PAN-like domain 337 405 IPR003609 -
Gabi3723g00001 788 Pfam S-locus glycoprotein domain 209 320 IPR000858 GO:0048544
Gabi3723g00001 788 ProSiteProfiles EGF-like domain profile. 286 323 IPR000742 -
Gabi3723g00001 788 Gene3D Phosphorylase Kinase; domain 1 423 532 - -
Gabi3723g00001 788 ProSiteProfiles PAN/Apple domain profile. 337 420 IPR003609 -
Gabi3723g00001 788 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 719 - -
Gabi3723g00001 788 Pfam Protein tyrosine and serine/threonine kinase 459 677 IPR001245 GO:0004672|GO:0006468
Gabi3723g00001 788 SMART blect_4 30 151 IPR001480 -
Gabi3723g00001 788 Gene3D Transferase(Phosphotransferase) domain 1 533 739 - -
Gabi3723g00001 788 SMART ntp_6 340 419 IPR003609 -
Gabi3723g00001 788 CDD STKc_IRAK 463 729 - -
Gabi3723g00001 788 Pfam D-mannose binding lectin 72 177 IPR001480 -
Gabi3723g00001 788 ProSiteProfiles Protein kinase domain profile. 457 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3723g00001 788 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 533 736 - -
Gabi3723g00001 788 SMART serkin_6 457 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3723g00001 788 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 425 532 - -
Gabi3723g00001 788 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Gabi3723g00001 788 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 148 - -
Gabi3723g00001 788 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 182 IPR036426 -
Gabi3723g00001 788 Pfam Domain of unknown function (DUF3403) 729 774 IPR021820 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3723g00001 Gabi-Chr3723 22704 31437 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3723g00001 445 774 Receptor kinase-like Gene Family AT4G11530 56.380 5.88e-126 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3723g00001 PK_Tyr_Ser-Thr 7.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3723g00001 - - cic:CICLE_v10010282mg 888.641