Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3720g00052 ATGGCCCAGGGAAGAGGCACTGCTGCAATGATTGCTCTAATGCTACTGTTTTGTATGTTGACGCTTCACTCTAGGATGGCTCATGCAAACACCTATAATGTTGGGGATACAAGTGGTTGGTCCTTTGATGCTATTAACTGGGCTAAGGGAAAGGATTTTATGGCTACTGATATCCTCGAATTCCATTATGATCCTGCTCTTCACAATGTGGTGGTAGTGGACGAGGATGGTTACAATGCATGTAATATTCCAGAAGGAGCAAAAGTTTATCAGTCAGGAGACGATCAAATCTCGCTTGCCCAGGGAATGAATTACTTCATATGTGGTATTCCTGGTCACTGCCAGGGTGGGATGAAAATTGCAGTAAATGCTTCTTGA 378 0.4365 MAQGRGTAAMIALMLLFCMLTLHSRMAHANTYNVGDTSGWSFDAINWAKGKDFMATDILEFHYDPALHNVVVVDEDGYNACNIPEGAKVYQSGDDQISLAQGMNYFICGIPGHCQGGMKIAVNAS 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3720g00052 125 ProSiteProfiles Phytocyanin domain profile. 30 125 IPR003245 GO:0009055
Gabi3720g00052 125 ProSitePatterns Type-1 copper (blue) proteins signature. 102 118 IPR028871 -
Gabi3720g00052 125 Pfam Plastocyanin-like domain 45 118 IPR003245 GO:0009055
Gabi3720g00052 125 SUPERFAMILY Cupredoxins 31 124 IPR008972 -
Gabi3720g00052 125 PANTHER BLUE COPPER PROTEIN 24 123 IPR039391 GO:0009055
Gabi3720g00052 125 FunFam basic blue protein-like 30 124 - -
Gabi3720g00052 125 Gene3D - 30 124 IPR008972 -
Gabi3720g00052 125 CDD Plantacyanin 31 124 IPR041844 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3720g00052 Gabi-Chr3720 385296 386235 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3720g00052 1 124 Phytocyanin Superfamily AT1G17800 38.406 1.12e-22 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3720g00052 - - qsu:111987088 161.384