Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3720g00046 ATGTCTCTTCCAGGTCGTCCTCGTGTTGTTGTGAATGGTGTTCGAAGAACGAGAACGTACCACTATTTCTGGTGCCTAATTTGCCAACGTACTGTGAGGATACCCTTTATGAATACAAATGGCTCATTGTGTCCCTATTGCTTCCATCAATTGTTTTATGAGCTTGATATCTCAAGGCCAAGGTTTCTCATGAATGTGCCTAATAACTTGGAGCCTTCACCTGCTACTCAACTTATCCATAGCTTGGCTCTCATTCTTGATCCAACTCTGAGGAGACAACACAACCATTTGAACACAACAACACAATGGGAAACAGAAAATGAAGATAGTCCAAATCCACAGGCTTGGATTACCCTCAGATTTGTTAGACCAACTAGTCCACCAAGGCTTATTGCCCCACCAGAAAACTTGGTCCAACAAGCCTATGACACAAACAATGCCACCCCATTTGAGAATACATTAGATGAGTTCATTGATGGGGTGATTCAGAACAATCGACCGGGGCCACCTCCAGCACAATCTTCAGCCATTGCAGCATTGCCAATGGTGAAACTAACACAAGATCATTTGGCTAGTGACCCCAATTGTCCAATTTGCAAAGATGAGTTTCAGCTTGATATGGAAGTGAGAGAGTTGCCCTGCAAACATTTCTATCATTCTGATTGTATTGTCCCTTGGCTGCGCATCCACAACACTTGCCCTGTGTGCCGCTATGAGATACAAGGTGTTGCTAGTGCTAATTACCATTTCCAAAACGAGAATGAGCAGAGTTTTGGGTTTGAGGAAGTTACAAGCACCTTGAACTGGTTTTGGAGCCAATTGGCATCGTTAAGGCCTATCCGTGCAGTCATAGATTGGACACAGTCCTACTTTAATTTCCAAGATAATCATGCTCGTGATCGAAGAGGTAAAAGGTGCAAGCACCTCAATTCAAGAACATGGGTGGAACCTTATTTCTTGGTGAAGAATTACATTTCCAAATGA 984 0.4319 MSLPGRPRVVVNGVRRTRTYHYFWCLICQRTVRIPFMNTNGSLCPYCFHQLFYELDISRPRFLMNVPNNLEPSPATQLIHSLALILDPTLRRQHNHLNTTTQWETENEDSPNPQAWITLRFVRPTSPPRLIAPPENLVQQAYDTNNATPFENTLDEFIDGVIQNNRPGPPPAQSSAIAALPMVKLTQDHLASDPNCPICKDEFQLDMEVRELPCKHFYHSDCIVPWLRIHNTCPVCRYEIQGVASANYHFQNENEQSFGFEEVTSTLNWFWSQLASLRPIRAVIDWTQSYFNFQDNHARDRRGKRCKHLNSRTWVEPYFLVKNYISK 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3720g00046 327 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 101 240 - -
Gabi3720g00046 327 FunFam E3 ubiquitin-protein ligase RING1-like 160 243 - -
Gabi3720g00046 327 SMART ring_2 196 236 IPR001841 -
Gabi3720g00046 327 CDD RING-H2_RNF126-like 195 237 - -
Gabi3720g00046 327 Pfam Ring finger domain 195 237 IPR001841 -
Gabi3720g00046 327 SUPERFAMILY RING/U-box 177 241 - -
Gabi3720g00046 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 243 IPR013083 -
Gabi3720g00046 327 ProSiteProfiles Zinc finger RING-type profile. 196 237 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3720g00046 Gabi-Chr3720 339809 341103 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3720g00046 1 294 C3H Transcription Factor Family AT1G68180 33.333 2.72e-46 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3720g00046 K11982 - gmx:100793656 427.943