Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3720g00025 ATGAAGATTGTTGTGATGATATTGCTTCCCTTGCTCTTAGCAATGTTTTTATGTATAAGCTCAGCAACAGCAACCACTTCTCCTTCCCCAGCCACATCCACAAATACATCCACATGTCCTATGGACCTGAATTATGTTCTGAGAATCCCATGGAACTCTTCTTCTTGCCAAAACTTCCAAGCTATGGCATCAAAAAATGAAGCAAACACAAACATTTGTTGCACATCTCTGTTGTCCCTATTTGCAATAGCTTTTGCACAGCACCTGAAAGAAACCTCTCAATTCAACCTTCCCAACGTTGCTACCTCAATTTCATGCCTTGATGACTTCCAATCCAAGCTCACATCCCTCTCACTCCCCAATAACCTGGCCAACTCATGCTTTGACCCTCATCAGTTTGTTATCTCACCTAACATCTGTGCAGGTATTCAAACTGTCCCAGATTGGATCAGCAAGCTTGGTCAGAACACGCCACTCAGCACTGCTTGTAAATCAGATCTCACTGATCTTTCTCTCTGTGATGTGTGCGTGGCTGCGGGCTTACAGGTAAAGCAGAAGCTTATTTCCATTGATGGGAATGCTTCACATTCCTTAGATTGTTTCTACTTCGCAATTCTTTATGCTGCTGGAATTGTGAATGAGTTTGGACCTGAAAGCAATGGTGCTGTGACTTGCATTTTTAGTATACCGGTTTATTCACAAGTGGGTTCTGGTGGAAAGAGTCACCAGGCTCTTGTGTTTGGGTTGACAGGAGCTGGTGTAGCATTGCTAGTTATGTCTTCTTTGTTGGCGCTGTATGTCTGGTATGACAGGAAGCATAGGAGGAAAAAGCTTGAGACTTTTCAATTTGATTTTGACCCTGAAGAACCAGGGTCTAGGCGTAGATTGAGGCCTAATACAGGGTCGATTTGGTTCAAAATTGAGGAGCTTGAGAAGGCTACTGATAATTTTTCAACTAAGAACTTCATAGGGCGAGGTGGGTTTGGGTTGGTTTTCAAGGGAACCTTGTCTGATGGATCAGTGGTAGCAGTTAAGAGGATATTAGAATCTGATTTTCAAGGGGATGTTGAGTTTTGTAATGAGGTGGAGATTATTAGCAACTTGAAGCACCGTAATCTGGTGCCGCTTAGAGGCTGTTGTGTGGCTGATGAGCATGAGAGTAAGAATTATGATGATAGCGGTAGCCAAAGATATCTTGTTTATGATTACATGCCAAATGGAAACCTGGAAGACCATCTCTTTATATCAACGGACCCTCAAAAAGCAAAGAATTCATTGACTTGGCCTCAAAGAAAAAGCATAATCGTGGATGTGGCAAAGGGGTTGGCTTATTTGCACTATGGAGTTAAACCTGCAATTTATCACAGGGATATCAAAGCCACCAATATACTACTTGATGAAGATATGAGGGCAAGAGTTGCAGATTTTGGGCTTGCTAAACAAAGTAGGGAGGGTCAGTCTCATCTTACTACCAGAGTAGCCGGAACTCATGGATATCTAGCACCGGAATATGCACTCTATGGTCAGCTGACTGAGAAGAGTGATGTCTATAGCTTTGGTGTGGTTGTTTTGGAGATAATGTGTGGGAGGAAAGCTCTTGACTTGTCTTCAGGAGGATCACCGAGGGCATTCTTGATCACGGATTGGGCTTGGTCATTGGTGAAATCTGGGAATATAGACGAGGCTTTGGATGCTTCCCTGTTAAAAGATGAAAACTTTCCCAGTTCAAATCCAAAGAGCATAATGGAAAGGTTCTTGCTGGTAGGAATTCTATGTTCTCATGTAATGGTTGCTTTGAGGCCAACAATTGCTGATGCTTTGAAGATGTTAGAAGGTGATATTGAGGTTCCCCAAATCCCGGATAGGCCTATGCCTCTTGGGCATCCTGCATTTTATAATGATGGCAATACTTTTAGCATATCTCCAGCATTAAGCGGCCCCAAATTGCGCAATGGAGACATGCTCAGGTCCATTAAGTGA 1980 0.4298 MKIVVMILLPLLLAMFLCISSATATTSPSPATSTNTSTCPMDLNYVLRIPWNSSSCQNFQAMASKNEANTNICCTSLLSLFAIAFAQHLKETSQFNLPNVATSISCLDDFQSKLTSLSLPNNLANSCFDPHQFVISPNICAGIQTVPDWISKLGQNTPLSTACKSDLTDLSLCDVCVAAGLQVKQKLISIDGNASHSLDCFYFAILYAAGIVNEFGPESNGAVTCIFSIPVYSQVGSGGKSHQALVFGLTGAGVALLVMSSLLALYVWYDRKHRRKKLETFQFDFDPEEPGSRRRLRPNTGSIWFKIEELEKATDNFSTKNFIGRGGFGLVFKGTLSDGSVVAVKRILESDFQGDVEFCNEVEIISNLKHRNLVPLRGCCVADEHESKNYDDSGSQRYLVYDYMPNGNLEDHLFISTDPQKAKNSLTWPQRKSIIVDVAKGLAYLHYGVKPAIYHRDIKATNILLDEDMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSGGSPRAFLITDWAWSLVKSGNIDEALDASLLKDENFPSSNPKSIMERFLLVGILCSHVMVALRPTIADALKMLEGDIEVPQIPDRPMPLGHPAFYNDGNTFSISPALSGPKLRNGDMLRSIK 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3720g00025 659 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 404 618 - -
Gabi3720g00025 659 FunFam probable receptor-like protein kinase At1g11050 279 403 - -
Gabi3720g00025 659 Pfam Protein kinase domain 318 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3720g00025 659 Pfam SPARK 35 201 IPR043891 -
Gabi3720g00025 659 SUPERFAMILY Protein kinase-like (PK-like) 297 611 IPR011009 -
Gabi3720g00025 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Gabi3720g00025 659 ProSiteProfiles Protein kinase domain profile. 317 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3720g00025 659 CDD STKc_IRAK 323 612 - -
Gabi3720g00025 659 Gene3D Transferase(Phosphotransferase) domain 1 404 618 - -
Gabi3720g00025 659 Gene3D Phosphorylase Kinase; domain 1 292 403 - -
Gabi3720g00025 659 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
Gabi3720g00025 659 SMART serkin_6 317 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3720g00025 659 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 70 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3720g00025 Gabi-Chr3720 171732 174793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3720g00025 36 656 Receptor kinase-like Gene Family AT1G11050 65.595 0.0 821
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Gabi3720g00025 Pkinase 4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3720g00025 - - gmx:100806560 1113.6