Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3720g00021 ATGGATGTGGCATCAACTATACCATATGAGGCAATAGGCTATTTGATCACTGGTAAACAAAAAGTGGGTCTCCCTTACTTCCTGTTGGGCTTGCTCAGATTTTGGCGACTCAGACGGGTCAAGCAATACTTCACAAGGCTTGAGAAAGACATCAGGTTCAGCTATTTCTGGGTTCGATGTGCTAGGCTTCTTTTTGTAACACTTTTTTCAGTTCATTGTGCTGGGTGCCTTTATTACATGCTAGCTGATCGCTACCCCCACCAAGGAAAGACATGGATTGGAGCTGTGATCCCAAACTTCCGAGAGACAAGCCTTCAAATCAGATACATCTCAGCCATGTACTGGTCCATCACCACCATGACCACTGTAGGTTATGGTGACCTTCATGCCGTGAACACTATGGAAATGATCTTCATTATTTTCTACATGCTCTTCAACCTTGGCCTAACTGCTTACTTGATTGGCAACATGACAAATCTTGTTGTTGAGGGAACTCGCCGTACCATGGAATTTAGAAATAGCATTGAAGCAGCATCAAACTTTGTGTGCCGAAATCGGTTGCCTTCAAGGTTAAAAGAGCAGATACTGGCTTACATGTGTTTAAGATATAAGGCAGAGAGCTTGAATCAGCATCAGCTTATTGAACAGCTACCAAAGTCCATTTGCAAAAGCATCTGCCAGCATTTGTTTTTTGAAACTGCAGACAATGTCTATCTTTTCAAAGGCGTCTCAAAAGAAATTCTGTTATCCCTGGTGGCAAAAATGAAGGCAGAATACATACCACCTAGAGAGGATGTTATCATGCAAAACGAAGCACCAGATGATGTTTATATTATAGTGTCCGGAGAAGTGGAGATCATCGAAAGTGTAATGGAGAAAGAAAGAATTATAGGGACTCTACAAACAAGGGACATGTTTGGAGAAGTTGGTGCACTTTGTTGTAAACCTCAGAGCTATACCTATAGAACCAAGACTCTCACGCAGCTCCTGAGGCTGAAAACCAATACTCTTATAGAAGCAATGCAGATTAAAAAAGAAGACAATATAAAAATACTCAAAAACTTCATTCAGCATGTCAAGCAGCTTAACGATCTGAATATAAGAGATTTAATGGTTGAGAATGTGGAAGAAGATGACCCTAACATGGCTGTGAACTTGCTAACTGTGGCCAGCACAGGGAATGCTGCTTTTCTTGAGGAGCTTCTAAGAGCAGGTCTTGATCCTGACATTGGAGACGCCAAAGGGAAAACCCCATTGCACATAGCAGCATCAAATGGGCATGAAGAGTGTGTTAAAGTCTTACTCAAGCATGCATGCAACGTACATATAAGAGACAACAATGGTAACACTGCATTATGGGATGCTATAGCTTCAAAACATTACTCTATATTCCGGATCCTCTATCAGTTTTCTGCTCTCTCTAATCCACAAATAGCAGGTGATCTCCTATGTACAGCAGCAAAAAGAAATGATTTAGCAGTAATGAATGAGCTTTTAAAGCAAGGATTAAACATTGACTCCAAAGATGGCCATGGTATAACAGCAATCCAAATTGCCATGGCAGAAAATCATGTGGACATGATTCAGTTGCTTGTCATGAATGGTGCTGATGTCTCTGATGTATATACTCATGAATTTTCTGCATCCACCTTAAATGAAATGCTAAAGAAACGTGAAATTGAGCATCTAATTACTGTAATTGAGTCCATACCCAGTGAATTTGTATTAAGGGGGCCACTTCAAGAGCAGCAGGAGCAAACTGCTTGTAGAAGATCTAATGGACTAAATTGTCTAAGAGTAAGCATATATAGAGGTCACCCTCTAGTGAGAAGAGAAAAAGGTTTCATGGAAGCTGGGAAACTAATAAGGTTGCCTGATTCATTAGAGGAGCTCAAAACTATTGCAGGTGAAAATTTTGGGTTTGAGGCAAAAGAAGCAATGGTGACTAACGAAGAAGGAGCAGAAATTGACTCTATTGATGTGATCAGAGATAATGATAAACTATTTTTTGTTGAATAG 2019 0.4032 MDVASTIPYEAIGYLITGKQKVGLPYFLLGLLRFWRLRRVKQYFTRLEKDIRFSYFWVRCARLLFVTLFSVHCAGCLYYMLADRYPHQGKTWIGAVIPNFRETSLQIRYISAMYWSITTMTTVGYGDLHAVNTMEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVCRNRLPSRLKEQILAYMCLRYKAESLNQHQLIEQLPKSICKSICQHLFFETADNVYLFKGVSKEILLSLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEIIESVMEKERIIGTLQTRDMFGEVGALCCKPQSYTYRTKTLTQLLRLKTNTLIEAMQIKKEDNIKILKNFIQHVKQLNDLNIRDLMVENVEEDDPNMAVNLLTVASTGNAAFLEELLRAGLDPDIGDAKGKTPLHIAASNGHEECVKVLLKHACNVHIRDNNGNTALWDAIASKHYSIFRILYQFSALSNPQIAGDLLCTAAKRNDLAVMNELLKQGLNIDSKDGHGITAIQIAMAENHVDMIQLLVMNGADVSDVYTHEFSASTLNEMLKKREIEHLITVIESIPSEFVLRGPLQEQQEQTACRRSNGLNCLRVSIYRGHPLVRREKGFMEAGKLIRLPDSLEELKTIAGENFGFEAKEAMVTNEEGAEIDSIDVIRDNDKLFFVE 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3720g00021 672 Pfam Ankyrin repeats (3 copies) 390 468 IPR002110 GO:0005515
Gabi3720g00021 672 ProSiteProfiles Ankyrin repeat region circular profile. 414 446 - -
Gabi3720g00021 672 SUPERFAMILY Voltage-gated potassium channels 32 203 - -
Gabi3720g00021 672 SMART ANK_2a 414 443 IPR002110 GO:0005515
Gabi3720g00021 672 SMART ANK_2a 479 507 IPR002110 GO:0005515
Gabi3720g00021 672 SMART ANK_2a 511 540 IPR002110 GO:0005515
Gabi3720g00021 672 SMART ANK_2a 381 410 IPR002110 GO:0005515
Gabi3720g00021 672 SMART ANK_2a 447 478 IPR002110 GO:0005515
Gabi3720g00021 672 SUPERFAMILY Ankyrin repeat 346 551 IPR036770 -
Gabi3720g00021 672 Pfam Ion transport protein 24 168 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi3720g00021 672 CDD CAP_ED 239 352 IPR000595 -
Gabi3720g00021 672 SUPERFAMILY cAMP-binding domain-like 166 357 IPR018490 -
Gabi3720g00021 672 ProSiteProfiles Ankyrin repeat region circular profile. 511 539 - -
Gabi3720g00021 672 FunFam Potassium channel KAT2 227 363 - -
Gabi3720g00021 672 Pfam Cyclic nucleotide-binding domain 259 342 IPR000595 -
Gabi3720g00021 672 Gene3D - 1 162 - -
Gabi3720g00021 672 SMART cnmp_10 239 356 IPR000595 -
Gabi3720g00021 672 ProSiteProfiles Ankyrin repeat profile. 511 543 IPR002110 GO:0005515
Gabi3720g00021 672 ProSiteProfiles Ankyrin repeat profile. 414 446 IPR002110 GO:0005515
Gabi3720g00021 672 PRINTS Ankyrin repeat signature 415 430 IPR002110 GO:0005515
Gabi3720g00021 672 PRINTS Ankyrin repeat signature 527 541 IPR002110 GO:0005515
Gabi3720g00021 672 ProSiteProfiles KHA domain profile. 599 672 IPR021789 -
Gabi3720g00021 672 Gene3D Jelly Rolls 207 379 IPR014710 -
Gabi3720g00021 672 Pfam KHA, dimerisation domain of potassium ion channel 599 670 IPR021789 -
Gabi3720g00021 672 Gene3D - 382 565 IPR036770 -
Gabi3720g00021 672 ProSiteProfiles cAMP/cGMP binding motif profile. 239 358 IPR000595 -
Gabi3720g00021 672 PANTHER POTASSIUM CHANNEL AKT1 1 671 IPR045319 GO:0005249|GO:0006813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3720g00021 Gabi-Chr3720 132117 137708 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3720g00021 1 419 Ion Channels AT4G22200 75.414 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3720g00021 K21867 - gmx:100798422 1130.55