Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3720g00020 ATGGAGAGGAATTTCAGTTCATATAATCCTCACCTAGCCTCTAGCTTGAAAGAGAGTGACAGGAATCACCAGCATCATCTTAAAGAAGATTGTATCTCTCCTTCTTTCAATCTACAAAATGTTTCAAAGCTCATTCTTCCCCCACTGGGTGTTTCAAACCAGAATCCTGTAGACTCAAAAGGGTGGATCATATCCCCAATGGATTCAAGATACAGGTGTTGGGAGAGTTTTATGGTTCTTCTGGTAGCTTATTCTGCATGGGTGTATCCCTTTGAAGTTGCTTTCATGCATTCATCTCCAAATAGGAAAATCTACATTGGAGACAATGTTGTTGATCTTTTCTTCGCTGTTGATATTGTTTTGACATTCTTCGTGGCTTACATTGATCGAACAACTCATCTACTAGTTCGAGACTCCAAAAAAATTGTAGTGAGGTACTTGTCAACATGGTTCGTGATGGATGTGGCATCAACTATACCATATGAGGCAATAGGCTATTTGATCACTGGTAAACAAAAAGTGGGTCTCCCTTACTTCCTGTTGGGCTTGCTCAGATTTTGGCGACTCAGACGGGTCAAGCAATACTTCACAAGGCTTGAGAAAGACATCAGGTTCAGCTATTTCTGGGTTCGATGTGCTAGGCTTCTTTTTGTAACACTTTTTTCAGTTCATTGTGCTGGGTGCCTTTATTACATGCTAGCTGATCGCTACCCCCACCAAGGAAAGACATGGATTGGAGCTGTGATCCCAAACTTCCGAGAGACAAGCCTTCAAATCAGATACATCTCAGCCATGTACTGGTCCATCACCACCATGACCACTGTAGGTTATGGTGACCTTCATGCCGTGAACACTATGGAAATGATCTTCATTATTTTCTACATGCTCTTCAACCTTGGCCTAACTGCTTACTTGATTGGCAACATGACAAATCTTGTTGTTGAGGGAACTCGCCGTACCATGGAATTTAGAAATAGCATTGAAGCAGCATCAAACTTTGTGTGCCGAAATCGGTTGCCTTCAAGGTTAAAAGAGCAGATACTGGCTTACATGTGTTTAAGATATAAGGCAGAGAGCTTGAATCAGCATCAGCTTATTGAACAGCTACCAAAGTCCATTTGCAAAAGCATCTGCCAGCATTTGTTTTTTGAAACTGCAGACAATGTCTATCTTTTCAAAGGCGTCTCAAAAGAAATTCTGTTATCCCTGGTGGCAAAAATGAAGGCAGAATACATACCACCTAGAGAGGATGTTATCATGCAAAACGAAGCACCAGATGATGTTTATATTATAGTGTCCGGAGAAGTGGAGATCATCGAAAGTGTAATGGAGAAAGAAAGAATTATAGGGACTCTACAAACAAGGGACATGTTTGGAGAAGTTGGTGCACTTTGTTGTAAACCTCAGAGCTATACCTATAGAACCAAGACTCTCACGCAGCTCCTGAGGCTGAAAACCAATACTCTTATAGAAGCAATGCAGATTAAAAAAGAAGACAATATAAAAATACTCAAAAACTTCATTCAGCATGTCAAGCAGCTTAACGATCTGAATATAAGAGATTTAATGGTTGAGAATGTGGAAGAAGATGACCCTAACATGGCTGTGAACTTGCTAACTGTGGCCAGCACAGGGAATGCTGCTTTTCTTGAGGAGCTTCTAAGAGCAGGTCTTGATCCTGACATTGGAGACGCCAAAGGGAAAACCCCATTGCACATAGCAGCATCAAATGGGCATGAAGAGTGTGTTAAAGTCTTACTCAAGCATGCATGCAACGTACATATAAGAGACAACAATGGTAACACTGCATTATGGGATGCTATAGCTTCAAAACATTACTCTATATTCCGGATCCTCTATCAGTTTTCTGCTCTCTCTAATCCACAAATAGCAGGTGATCTCCTATGTACAGCAGCAAAAAGAAATGATTTAGCAGTAATGAATGAGCTTTTAAAGCAAGGATTAAACATTGACTCCAAAGATGGCCATGGTATAACAGCAATCCAAATTGCCATGGCAGAAAATCATGTGGACATGATTCAGTTGCTTGTCATGAATGGTGCTGATGTCTCTGATGTATATACTCATGAATTTTCTGCATCCACCTTAAATGAAATGCTAAAGAAACGTGAAATTGAGCATCTAATTACTGTAATTGAGTCCATACCCAGTGAATTTGTATTAAGGGGGCCACTTCAAGAGCAGCAGGAGCAAACTGCTTGTAGAAGATCTAATGGACTAAATTGTCTAAGAGTAAGCATATATAGAGGTCACCCTCTAGTGAGAAGAGAAAAAGGTTTCATGGAAGCTGGGAAACTAATAAGGTTGCCTGATTCATTAGAGGAGCTCAAAACTATTGCAGGTGAAAATTTTGGGTTTGAGGCAAAAGAAGCAATGGTGACTAACGAAGAAGGAGCAGAAATTGACTCTATTGATGTGATCAGAGATAATGATAAACTATTTTTTGTTGAATAG 2475 0.4016 MERNFSSYNPHLASSLKESDRNHQHHLKEDCISPSFNLQNVSKLILPPLGVSNQNPVDSKGWIISPMDSRYRCWESFMVLLVAYSAWVYPFEVAFMHSSPNRKIYIGDNVVDLFFAVDIVLTFFVAYIDRTTHLLVRDSKKIVVRYLSTWFVMDVASTIPYEAIGYLITGKQKVGLPYFLLGLLRFWRLRRVKQYFTRLEKDIRFSYFWVRCARLLFVTLFSVHCAGCLYYMLADRYPHQGKTWIGAVIPNFRETSLQIRYISAMYWSITTMTTVGYGDLHAVNTMEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVCRNRLPSRLKEQILAYMCLRYKAESLNQHQLIEQLPKSICKSICQHLFFETADNVYLFKGVSKEILLSLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEIIESVMEKERIIGTLQTRDMFGEVGALCCKPQSYTYRTKTLTQLLRLKTNTLIEAMQIKKEDNIKILKNFIQHVKQLNDLNIRDLMVENVEEDDPNMAVNLLTVASTGNAAFLEELLRAGLDPDIGDAKGKTPLHIAASNGHEECVKVLLKHACNVHIRDNNGNTALWDAIASKHYSIFRILYQFSALSNPQIAGDLLCTAAKRNDLAVMNELLKQGLNIDSKDGHGITAIQIAMAENHVDMIQLLVMNGADVSDVYTHEFSASTLNEMLKKREIEHLITVIESIPSEFVLRGPLQEQQEQTACRRSNGLNCLRVSIYRGHPLVRREKGFMEAGKLIRLPDSLEELKTIAGENFGFEAKEAMVTNEEGAEIDSIDVIRDNDKLFFVE 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3720g00020 824 ProSiteProfiles cAMP/cGMP binding motif profile. 391 510 IPR000595 -
Gabi3720g00020 824 FunFam Potassium channel KAT3 73 315 - -
Gabi3720g00020 824 SUPERFAMILY Ankyrin repeat 498 703 IPR036770 -
Gabi3720g00020 824 CDD CAP_ED 391 504 IPR000595 -
Gabi3720g00020 824 SMART ANK_2a 663 692 IPR002110 GO:0005515
Gabi3720g00020 824 SMART ANK_2a 533 562 IPR002110 GO:0005515
Gabi3720g00020 824 SMART ANK_2a 599 630 IPR002110 GO:0005515
Gabi3720g00020 824 SMART ANK_2a 631 659 IPR002110 GO:0005515
Gabi3720g00020 824 SMART ANK_2a 566 595 IPR002110 GO:0005515
Gabi3720g00020 824 PANTHER POTASSIUM CHANNEL AKT1 38 823 IPR045319 GO:0005249|GO:0006813
Gabi3720g00020 824 SMART cnmp_10 391 508 IPR000595 -
Gabi3720g00020 824 ProSiteProfiles Ankyrin repeat profile. 663 695 IPR002110 GO:0005515
Gabi3720g00020 824 Pfam Cyclic nucleotide-binding domain 411 494 IPR000595 -
Gabi3720g00020 824 SUPERFAMILY Voltage-gated potassium channels 66 314 - -
Gabi3720g00020 824 Gene3D Jelly Rolls 359 531 IPR014710 -
Gabi3720g00020 824 FunFam Potassium channel KAT2 379 515 - -
Gabi3720g00020 824 Gene3D - 72 314 - -
Gabi3720g00020 824 ProSiteProfiles Ankyrin repeat region circular profile. 663 691 - -
Gabi3720g00020 824 ProSiteProfiles Ankyrin repeat region circular profile. 566 598 - -
Gabi3720g00020 824 Pfam Ion transport protein 72 320 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi3720g00020 824 PRINTS Ankyrin repeat signature 679 693 IPR002110 GO:0005515
Gabi3720g00020 824 PRINTS Ankyrin repeat signature 567 582 IPR002110 GO:0005515
Gabi3720g00020 824 Gene3D - 534 717 IPR036770 -
Gabi3720g00020 824 ProSiteProfiles Ankyrin repeat profile. 566 598 IPR002110 GO:0005515
Gabi3720g00020 824 PRINTS EAG/ELK/ERG potassium channel family signature 305 314 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi3720g00020 824 PRINTS EAG/ELK/ERG potassium channel family signature 108 118 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi3720g00020 824 PRINTS EAG/ELK/ERG potassium channel family signature 261 278 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi3720g00020 824 PRINTS EAG/ELK/ERG potassium channel family signature 287 298 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi3720g00020 824 PRINTS EAG/ELK/ERG potassium channel family signature 119 128 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi3720g00020 824 Pfam Ankyrin repeats (3 copies) 542 620 IPR002110 GO:0005515
Gabi3720g00020 824 ProSiteProfiles KHA domain profile. 751 824 IPR021789 -
Gabi3720g00020 824 Pfam KHA, dimerisation domain of potassium ion channel 751 822 IPR021789 -
Gabi3720g00020 824 SUPERFAMILY cAMP-binding domain-like 318 509 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3720g00020 Gabi-Chr3720 132115 139139 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3720g00020 1 571 Ion Channels AT4G22200 72.586 0.0 860