Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3720g00014 ATGTCTGGAATCAACACCAATATGCCAGCAGCAACATCTTTTGAGAAGGATGTGGTGTTCAAAGCGTGTGAACGCAATCATACAATGTCACTTGGTCGCGTTTGCTATGATGGTTGCCAAGAGTTTCTCGGAGGAGGGGGAAAGACCAAGGATGCCATGTTGTGTGCTGCATGTGACTGTCACCGAAGCTTTCACCGCAAATGCATTATTTACGACCCTATAACCCAGCGTCAAACTGAGAACATTTTGAATACAAATAATTCTCTTGCAGAGGTGGAGATGATGTCAATGCTGCCAAAGAGGAGGAAGAGGACTGTGTTCACACCAGAGCAGAAAAATCAGATGATGAGGTTTGCTGAGAATGTGGGATGGACACCTAAAGGGGCTAACAAGGATGAAATCCAACGCTTCTGTTTGGAGATAGGAATCTCCCGTAAAACTTTCCTAGTTTGGCTGAGTAATAACCGTCATCGAGCAAAGCAAAATAATACCAAATAA 498 0.4398 MSGINTNMPAATSFEKDVVFKACERNHTMSLGRVCYDGCQEFLGGGGKTKDAMLCAACDCHRSFHRKCIIYDPITQRQTENILNTNNSLAEVEMMSMLPKRRKRTVFTPEQKNQMMRFAENVGWTPKGANKDEIQRFCLEIGISRKTFLVWLSNNRHRAKQNNTK 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3720g00014 165 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 16 158 - -
Gabi3720g00014 165 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 20 68 IPR006456 -
Gabi3720g00014 165 Gene3D - 85 162 - -
Gabi3720g00014 165 ProSiteProfiles 'Homeobox' domain profile. 98 162 IPR001356 GO:0003677
Gabi3720g00014 165 Pfam ZF-HD protein dimerisation region 18 68 IPR006456 -
Gabi3720g00014 165 CDD homeodomain 101 163 IPR001356 GO:0003677
Gabi3720g00014 165 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 20 67 IPR006456 -
Gabi3720g00014 165 SUPERFAMILY Homeodomain-like 94 161 IPR009057 -
Gabi3720g00014 165 NCBIfam homeobox domain, ZF-HD class 100 156 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3720g00014 Gabi-Chr3720 108585 109082 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3720g00014 9 163 ZF-HD Transcription Factor Family AT2G18350 35.079 1.45e-30 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gabi3720g00014 ZF-HD_dimer 6.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3720g00014 - - lja:Lj4g3v2313490.1 171.014