Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3720g00011 ATGAGGCAAGGTGGAGCCAATTCAGCCGCGGCTCATAAATGCGAGGATAAAATTCCAAAGCTCAATTGGTTGAATCATGCCAATGCTCATGATAATTTCTCATGCCAAGCCAAATTCTTGAGCTCCAATTTTCTGTTCTCTCTTCCAACACAGAAACCTTCCTATGAAGAACCAATCGCTGGGAGGTCTGTAGTCCGACAAAATCAAAATATTCAAAGTTCACAAAGAGTGCAAGTTGAGAAGGCTTGGGTTGCTCTTTCAAGTCTACAGAGTTCTAGCAGGAATTATGTCCAACCTGGAAAAACTGTTAAAGTTACTCCTCAGCTTCATGAAGATAAGAGAATAACTTCCTTCCAAGGAAGCAATGAGAACAGCAACCTTAGGTGTCCTAATGTCACCACAACTCCAACTGTCATTAATCATAGTTCTCGGGTTTTGGATAGTTCAGTGAACAATCATGTCCAGTTTACATGCCAAATCAATGAGTCTACGAAATGCATGACAGATAATATTAATGATGATGATGATGACATACTTGAGAATATTGATGTTGACCAAATTGTGGAGAAATATCAGTCAACTTGCACTCCCCAACCATCCGGGTCCAAGCTTCCTCCTATTACACCAACTGCTGATAAAGATAATTTTGCTAGACAGGGAGATAATTTTTTGCCACCAGAGCTCTGCTTAGATTGCATCCATGGTTACAAGTTAGGGCTTTGCCCTGAAGCAGCAAATCATTTGCAGGAATTGAAGGATAGTCTAATTGCTATCTCTAATGAACTGCTTGACAATGTTGACAACCTCAGCTCTACACAGATAGCAAAGCTTCGCAAAGATAGGTCACAGTTGAATAAGCAAATTCAGCAGCTTGAAAAGTATATTCATTCCAGTAATCTTGATGATGAAAGACAAAAGTCACATTTTTCTGCTTCCACAGCACAACCAACATCTTTTGTGTATGAAACACCTCCGCAAACTATGCTCAGTAGTGGACCAAAGAGATATGATGCCCAGGCTTGTATGGGTAATGGGACATGTGGGTCATCATTGCAGTCTTTTTCCTTATTTTCTGTAGATCAGTATGGCATGTCATCAGGTCCGGTGGAGAGGGAAGCATTCATCCCGAAGATTATTGAAGTTAATTACATTGAAGGTTCTGGAGACAAACGCTGGAGCAGCCAGGATTTTCCTTGGACAAAAATGTTAGAGGTTAATAATAAAAAAGTTTTTGGAAATCATTCTTTTCGCCCTAATCAAAGAGAGGTCATTAATGCCACAATGAGTGGATGTGATGTTTTTGTTTTGATGCCCACCGGTGGAGGAAAGAGTCTGACCTATCAGCTACCAGCTCTTATTTGTCCTGGGATAACATTAGTAATTTCTCCCCTTGTGTCCCTCATTCAAGATCAAATAATGCACCTAATGCAGGCAAATATACCTGCTGCTTACTTAAGTGCCAATATGGAATGGGCTGAACAGCAAGAGATCCTTAGAGAACTTAATTCTGATTATTCTAAATACAAGTTGTTATATGTGACACCCGAAAAGGTTGCCAGAAGTGATATTCTTTTGCGACACTTGGAGAGTTTACATGTTCGTGAGTTGCTTGCAAGGATTGTAATTGATGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGTATATTGAAACAGAAATTCCCAAATACTCCTGTTTTAGCTTTAACTGCTACAGCAACTGCTAGTGTAAAAGAAGATGTTGTGCAAGCACTTGGTCTTGTTAACTGCATTGTTTTCCGGCAAAGCTTTAATCGCCCAAACTTATGGTATTCTGTTGTCCACAAGACCAAAAAGTGTGTGGAGGACATTGACAAATTCATTAGGGAAAATCATTTTGATGAATGTGGCATTGTCTATTGTCTTTCACGAATGGATTGTGAAAAGGTTGCTGAAAAATTACAGGAATGTGGGCATAAATGTGCATTTTATCATGGTAGCATGGATCCTGCTCAACGTGCCTTTGTTCAAAAGCAGTGGAGCAAAGATGAAATCAATATAATTTGTGCTACTGTTGCATTTGGAATGGGTATTAACAAACCTGATGTCCGCTTTGTAATCCATCATTCCCTCCCAAAATCTATTGAAGGATATCATCAGGAATGTGGACGAGCTGGTAGAGATGGTCAACGTTCATCCTGTGTGTTATATTATAGCTATAGTGATTATATACGAGTTAAGCATATGCTAAGTCAAGGAGCAATAGAGCAGAGTCCCATGGCATCTGGATACAATCGTTTAAATATGTCAAATTCAGGAAGGATACTGGAAACAAATACTGAAAACCTGTTGAAAATGGTCAGTTACTGTGAAAATGATGTTGACTGCCGGCGCCTTATGCAGCTTGCTCATTTTGGGGAGAAGTTCAATTCTTCAACATGTCAGAAAACATGTGATAATTGCTTGAAGGTCACAACTTTCATCGAGAAGGATGTCACAGAGATAGCAAAGCAATTGGTTGAACTAGTTAAGCTAACAGGGCAGAAGGTCTCATCATCTCATATATTAGAAGTGTATCGTGGTTCCTTGAGCCAGTTGGTCAAGAAACACCGGCATGAGACTGTGAGTCTTCACGGTGCTGGGAAGCACCTATCTAAGGGTGAGGCTTCCCGAGTATTGCATCATCTTGTTGTTGATGATTTTCTTATGGAGGAGGTAAAGAAAAGTGATTTTTATGGATCAGTATCATCAGTGTTGAAGGTGAATGAGCCCAAGCTCCGTAATCTGTTGTTTGGTGGGCAGAGAATTATATTGAGATTCCCATCCTCTACAAAGACATCAAAACCTGGGAAATCTGATGTAACTCCAGCTAAAGGTTCTCTGACATCTGGGAAGCTGAATTTTCCACTAATTGACATTCCTGCCCAGCCTCAAACTGACGTGGACTTGAATCTTTCAGCTAAGTTGTACACTGCTTTGCGGATGTTGCGGACAGCTCTTGTTAAAGAAGCTGGAGAGGGTGTCATGGCTTACCACATATTTGGTAATGCCACGTTGCAGCAGATAAGCAAGAGAGTACCGAGAACAAAAGAAGAACTCCTGGATATCAATGGCATTAGCAAGACTAAGGTAAGCAAGTATGGGGACCGGTTACTGGAAACCATTGAAAATACGATCAATGAATATTACAAGTTGGATAAAAACAGCAGTGGCAGCGGCAGCGGCAGCAAAGGCAGCGCTGATTCCAACAAAAGGAGACGAGAGGCATATGGAGACCCAGATGCAAATGCCGAGGATGAAGATGCCTTCACCAAAAGTACTGGTCGTTCAAAGAAAAGGACAGTAAAGAGACAAAATAAAAAAGCTGAGATGTGTGATTCTGCAGACGAAGATTATTACCATGGATGCCTTGATGAGGACCTCGATTTTGACAACATAGAAAACGATGCACTAGATAAATTAACTTGTAGAAATGCTGCAGGAAGAGTACTACCTCAATGGACAGCGTCTTGA 3516 0.4084 MRQGGANSAAAHKCEDKIPKLNWLNHANAHDNFSCQAKFLSSNFLFSLPTQKPSYEEPIAGRSVVRQNQNIQSSQRVQVEKAWVALSSLQSSSRNYVQPGKTVKVTPQLHEDKRITSFQGSNENSNLRCPNVTTTPTVINHSSRVLDSSVNNHVQFTCQINESTKCMTDNINDDDDDILENIDVDQIVEKYQSTCTPQPSGSKLPPITPTADKDNFARQGDNFLPPELCLDCIHGYKLGLCPEAANHLQELKDSLIAISNELLDNVDNLSSTQIAKLRKDRSQLNKQIQQLEKYIHSSNLDDERQKSHFSASTAQPTSFVYETPPQTMLSSGPKRYDAQACMGNGTCGSSLQSFSLFSVDQYGMSSGPVEREAFIPKIIEVNYIEGSGDKRWSSQDFPWTKMLEVNNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLMQANIPAAYLSANMEWAEQQEILRELNSDYSKYKLLYVTPEKVARSDILLRHLESLHVRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLWYSVVHKTKKCVEDIDKFIRENHFDECGIVYCLSRMDCEKVAEKLQECGHKCAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMLSQGAIEQSPMASGYNRLNMSNSGRILETNTENLLKMVSYCENDVDCRRLMQLAHFGEKFNSSTCQKTCDNCLKVTTFIEKDVTEIAKQLVELVKLTGQKVSSSHILEVYRGSLSQLVKKHRHETVSLHGAGKHLSKGEASRVLHHLVVDDFLMEEVKKSDFYGSVSSVLKVNEPKLRNLLFGGQRIILRFPSSTKTSKPGKSDVTPAKGSLTSGKLNFPLIDIPAQPQTDVDLNLSAKLYTALRMLRTALVKEAGEGVMAYHIFGNATLQQISKRVPRTKEELLDINGISKTKVSKYGDRLLETIENTINEYYKLDKNSSGSGSGSKGSADSNKRRREAYGDPDANAEDEDAFTKSTGRSKKRTVKRQNKKAEMCDSADEDYYHGCLDEDLDFDNIENDALDKLTCRNAAGRVLPQWTAS 1171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3720g00011 1171 Coils Coil 274 294 - -
Gabi3720g00011 1171 FunFam ATP-dependent DNA helicase Q-like 4A 980 1066 - -
Gabi3720g00011 1171 Pfam RQC domain 829 946 IPR018982 GO:0006260|GO:0006281|GO:0043138
Gabi3720g00011 1171 Gene3D - 380 606 IPR027417 -
Gabi3720g00011 1171 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 424 599 IPR014001 -
Gabi3720g00011 1171 Pfam HRDC domain 988 1056 IPR002121 GO:0003676
Gabi3720g00011 1171 CDD DEXHc_RecQ 407 606 - -
Gabi3720g00011 1171 SMART ultradead3 412 615 IPR014001 -
Gabi3720g00011 1171 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 538 547 IPR002464 -
Gabi3720g00011 1171 NCBIfam RecQ family ATP-dependent DNA helicase 408 883 IPR004589 GO:0004386|GO:0006310
Gabi3720g00011 1171 PANTHER DNA HELICASE RECQ FAMILY MEMBER 388 1078 - -
Gabi3720g00011 1171 SMART helicmild6 649 730 IPR001650 -
Gabi3720g00011 1171 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 873 IPR027417 -
Gabi3720g00011 1171 CDD SF2_C_RecQ 607 739 - -
Gabi3720g00011 1171 Pfam RecQ zinc-binding 741 823 IPR032284 -
Gabi3720g00011 1171 ProSiteProfiles Rhodanese domain profile. 639 681 IPR001763 -
Gabi3720g00011 1171 MobiDBLite consensus disorder prediction 1067 1123 - -
Gabi3720g00011 1171 SMART hrdc7 984 1066 IPR002121 GO:0003676
Gabi3720g00011 1171 SUPERFAMILY HRDC-like 987 1060 IPR010997 GO:0000166|GO:0044237
Gabi3720g00011 1171 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 624 785 IPR001650 -
Gabi3720g00011 1171 Gene3D HRDC domain 981 1067 IPR044876 -
Gabi3720g00011 1171 FunFam Bloom syndrome, RecQ helicase 607 827 - -
Gabi3720g00011 1171 Pfam DEAD/DEAH box helicase 418 586 IPR011545 GO:0003676|GO:0005524
Gabi3720g00011 1171 SMART RQC_2 832 943 IPR018982 GO:0006260|GO:0006281|GO:0043138
Gabi3720g00011 1171 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 391 748 IPR027417 -
Gabi3720g00011 1171 FunFam ATP-dependent DNA helicase RecQ 389 606 - -
Gabi3720g00011 1171 Gene3D - 830 940 IPR036388 -
Gabi3720g00011 1171 ProSiteProfiles HRDC domain profile. 984 1066 IPR002121 GO:0003676
Gabi3720g00011 1171 MobiDBLite consensus disorder prediction 1081 1109 - -
Gabi3720g00011 1171 Pfam Helicase conserved C-terminal domain 624 729 IPR001650 -
Gabi3720g00011 1171 Gene3D - 607 826 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3720g00011 Gabi-Chr3720 73479 81934 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3720g00011 638 761 Eukaryotic Initiation Factors Gene Family AT3G19760 23.622 3.02e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3720g00011 K10901 - gmx:100800006 1850.48