Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3720g00002 ATGGATAGTGATAGTGAAGGTCACGTTCTTCACCCGAAGCGTCGATCTCGATCTCGGTCTCGGTCTCCATCCAAGGTCTCTGAATCTGATGGCACTACTAAAGAACCGGTTTTCTTACACGGCGACTTGGATCTGTGGATATTAGAAGCAAAGTCTCTTCCCAATTTGGATTTTTCAACCGAAGCGGTGCGAAAATGTTTCACTATGGGGAACCGTTGCTCCCCGCCATTTATGAAAGGGCTCAAGACACACTCTGGGAAACACAAAATGATAACCAGTGATCCTTATGTCTCTGTTTGTCTCGCTGGGGCTACCGTAGCTCAAACTAGAGTCATTTCCAATTGCGAGAACCCTTTGTGGGATGAGCATTTTGTTGTCCCAGTTGCTCACCCTGTTCACAAAGTGGAGTTCCATGTCAAGGACAATGATGTTCTTGGAGCTCAACTCATCGGAGTGGTTGAGATACCTGTTCACAAGATTCTCTCCGGAAACATTATCAATGATTGGTTTCCAATCATTGCCCAGTATGCAAGCTGCTTAAAACCTTATCCTGAGTTGCATATCTCTGTTCACTTTAGGCCAGTTGGAATCATCAACCCTTCATCAGATTCTGAGTCAGATGACAACGATTATCTGGGAGTTCCTAATACATATTTTCCTCTCCGAAAAGGTGGGGCTGTGACTCTGTATCAAGATGCACATGTACCGGATGATGATAAGCTACCTGAGATTCTACTTGATGGTGGAAAGGTATTTCAGCATGGTAAATGTTGGGAGGAGATATGCCATGCGATTTTGGAGGCTCACCACCTTATATATATTATAGGGTGGTCACTTTACCACCCAATAAAGCTTATTAGAGAGCCAACAAAACCCTTGCCCTCTGGTGGAGAGCTTTCGCTTGGAGAGTTGTTGAAATACAAGTCACAAGAAGGGGTCCGCGTGGTTATGCTGATTTGGGATGACAAAACGTCGCATGACAAATTTCTTTTGAAAACAGAAGGTGTCATGCAGACTCACGATGAAGAAACTAAAAAGTATTTTAAACACTCCACTGTTCACTGTGTGCTTGCCCCACGTTATGCAAGCAATAAGCTCAGTATTTTCAAGCAACAGGTTGTGGGGACCCTTTTTACGCATCATCAGAAGTGTGTGCTCGTAGACACTCAAGCATCTGGGAATAATCGGAAAATAACTGCTTTTATTGGTGGCTTGGATCTCTGTGATGGCAGATATGATACTCCTGACCATCGGCTTTTTGATGATCTAGATACTGTCTTTAAAAATGATTTTCATAATCCTACATTCCCATCAAATTCGCATGGGCCAAGGGAGCCATGGCATGACTTGCATTGCAAAGTCGAGGGTCCAGCTGCATATGACATATTGACCAATTTTGAGCAGAGATGGAAGAAAGCCAAAAAATGGCGTGATTTCAGGCTCAAAAAGGTGACAAGTTGGCATGATGATCCTTTGCTAAGCCTAGAACGAATTTCATGGATTCTCACTCCATCTTCTGATCCTGAAGGTGATAGAGCTGTTCGTGTAACTAATGAGGATGATCCTGAGAGTTGGCATGTGCAGGTATTTCGGTCAATAGATTCAGGATCTGTGAAAGGTTTTCCAAAGGATGTTCGGGAAGCTAAGGCTCAGAATCTTTTCTGTGGAAAAAATTTGAAAGTAGATAAAAGTATTCATGCGGCTTATGTAAAAGCAATAAGATCAGCTCAACGCTTCATATATATTGAGAATCAGTATTTTTTGGGATCCTCGTATCATTGGCCTTCACACAAAGGTGCAGGTGCAAATCACTTGGTTCCCATGGAATTGGCTTTAAAAATCGCCAGCAAAATCAGTGCAAATGAACGTTTTTCTGTGTATATAGTTATTCCAATGTGGCCAGAGGGGGTTCCCACTAGTGCTTCTGTTCAAGAAATTTTGTTCTGGCAGGGACAGACAATGTCTATGATGTACAGAATTGTTGCCGATGCGCTTAAAAAGAGTGGTCTTTCCGATCATCCGCAAGATTATCTCAATTTTTACTGTCTTGGAAAGCGCGAACCTCAATCCTCAGAATGTCCATTAACACCAACTCATCCAGCGGAAAACCGTGCTTTGGTATCAGTTCAAAAATTCAGACGTTTTATGATTTATGTTCATGCAAAAGGAATGATAGTTGATGATGAATACGTAATCATGGGATCTGCAAATATTAACCAGAGATCCTTGGATGGTTCAAGAGACACAGAAATAGCTATTGGTGCTTATCAGCCAAAGTATACATGGAAAGAAAAGAATTCTCATCCTCATGGCCAGGTGTATGGTTACAGAAACTCACTCTGGGCTGAACACCTTGAGAGTCTTGATGAAACTTTTGCTGAACCACACAGCCTAGAATGTGTTAGATATGTCAACAATATAGCCAGACAAAACTGGGATGCATACGTGTCTGAGGAAGGTAAGGAGATGAGGGGACATTTGATGCAGTATCCAGTTCATGTCAGCTGGGATGGAGAAGTCCATGCACTTCCAGACTATGAGACCTTTCCTGATGTTGGTGGTAAAATTCTTGGATCATCCAATTCTCTTCCGGATGCACTAACCACCTGA 2610 0.4261 MDSDSEGHVLHPKRRSRSRSRSPSKVSESDGTTKEPVFLHGDLDLWILEAKSLPNLDFSTEAVRKCFTMGNRCSPPFMKGLKTHSGKHKMITSDPYVSVCLAGATVAQTRVISNCENPLWDEHFVVPVAHPVHKVEFHVKDNDVLGAQLIGVVEIPVHKILSGNIINDWFPIIAQYASCLKPYPELHISVHFRPVGIINPSSDSESDDNDYLGVPNTYFPLRKGGAVTLYQDAHVPDDDKLPEILLDGGKVFQHGKCWEEICHAILEAHHLIYIIGWSLYHPIKLIREPTKPLPSGGELSLGELLKYKSQEGVRVVMLIWDDKTSHDKFLLKTEGVMQTHDEETKKYFKHSTVHCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVLVDTQASGNNRKITAFIGGLDLCDGRYDTPDHRLFDDLDTVFKNDFHNPTFPSNSHGPREPWHDLHCKVEGPAAYDILTNFEQRWKKAKKWRDFRLKKVTSWHDDPLLSLERISWILTPSSDPEGDRAVRVTNEDDPESWHVQVFRSIDSGSVKGFPKDVREAKAQNLFCGKNLKVDKSIHAAYVKAIRSAQRFIYIENQYFLGSSYHWPSHKGAGANHLVPMELALKIASKISANERFSVYIVIPMWPEGVPTSASVQEILFWQGQTMSMMYRIVADALKKSGLSDHPQDYLNFYCLGKREPQSSECPLTPTHPAENRALVSVQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLDGSRDTEIAIGAYQPKYTWKEKNSHPHGQVYGYRNSLWAEHLESLDETFAEPHSLECVRYVNNIARQNWDAYVSEEGKEMRGHLMQYPVHVSWDGEVHALPDYETFPDVGGKILGSSNSLPDALTT 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3720g00002 869 CDD C2_plant_PLD 36 193 - -
Gabi3720g00002 869 Gene3D C2 domain 37 193 IPR035892 -
Gabi3720g00002 869 PIRSF PLD_plant 28 869 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Gabi3720g00002 869 SMART pld_4 376 411 IPR001736 GO:0003824
Gabi3720g00002 869 SMART pld_4 715 742 IPR001736 GO:0003824
Gabi3720g00002 869 SUPERFAMILY Phospholipase D/nuclease 217 481 - -
Gabi3720g00002 869 Gene3D Endonuclease Chain A 530 768 - -
Gabi3720g00002 869 FunFam Phospholipase D delta 248 490 - -
Gabi3720g00002 869 SUPERFAMILY Phospholipase D/nuclease 549 797 - -
Gabi3720g00002 869 Pfam PLD-like domain 705 753 IPR025202 -
Gabi3720g00002 869 Pfam Phospholipase D C terminal 789 859 IPR024632 -
Gabi3720g00002 869 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 38 195 IPR035892 -
Gabi3720g00002 869 MobiDBLite consensus disorder prediction 1 33 - -
Gabi3720g00002 869 SMART C2_3c 42 169 IPR000008 -
Gabi3720g00002 869 ProSiteProfiles C2 domain profile. 22 170 IPR000008 -
Gabi3720g00002 869 Pfam Phospholipase D Active site motif 377 411 IPR001736 GO:0003824
Gabi3720g00002 869 Gene3D Endonuclease Chain A 250 491 - -
Gabi3720g00002 869 PANTHER PHOSPHOLIPASE D 36 859 IPR015679 -
Gabi3720g00002 869 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 376 411 IPR001736 GO:0003824
Gabi3720g00002 869 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 715 742 IPR001736 GO:0003824
Gabi3720g00002 869 Pfam C2 domain 41 172 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3720g00002 Gabi-Chr3720 11768 24067 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3720g00002 37 868 Phospholipase D Gene Family (Wang group) AT2G42010 54.355 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3720g00002 K01115 - gmx:100779740 1429.85