Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi371g00004 ATGGATGAAGGCGAGGGAGGGTACGGTGAGGGTGGGGATCCCATGGATCAGTTCCACCGTAACGAAGCTATATCCGCTGTTGCCGACGAGGGTTTCTTGGCCGAGGAAGACGACGATTACGAGGACCTTTACAACGATGTCAATGTTGGCGAAGGGTTCCTTCAATCTTTGCGCAAGAACGACGATTTAGGGCTTCGAAATGACGAAGTTGACGACAAGAAGCCGCAGCCAACTCAGGATCCCGGTGGGATTTCTATACCAGGTGTCGGTGGCAACAGTGGTGCCGGTGAGGGTAGTGGTACCGCCGGCGGGGTTGTAGAATCGAGGGTTCCTGGGAGAGTTGATGGGGTTCAGAATCAGGGGTTTAGAGGGGATGAGGTGGGTGTCAAAGTGGGGATTAGGGTTGAATTAGGGCATCAATCTGGGAAATTGAGTGAGATTGAGGAGCAGGGTGGAAATGATAATGTTGGAGTGCAGGGGACTGGGCAGCAACAGCATGGTGAAGTTATTGGGAGTGTTGGAAACGAGGGTTTGGTTAGGCAAGGTGGTGGTGGTGGAGGTGGAGGTGGAGGTGGAGGAGGGAATCTCAATAGGGCTGGTGGAAATGGGGTTGGGAACAGTGTAAATGCTGTTGGTAGTGTTAATACTGGAGGAGGTGGAGGTGGAGGTGGAATTGGTGTCGGTGCAGGTGTTGGTGCTGCTGTGGCTGCAGGTGGTGGTGCTGGTGGTGGCACTATATTATTTGTCGGTGATTTGCACTGGTGGACTACGGATGCTGAGCTGGAAGCTGAGCTTTGTAAGTACGGGACTGTGAAGGAGGTAAAGTTTTTTGATGAGAAAGCTAGTGGGAAATCGAAAGGGTACTGCCAGGTTGAGTTTTATGAACCTTCTGCTGCAACTGCTTGTAAGGAAGGGATGAATGGGCATCAGTTTAATGGGAGACCGTGTGTTGTTGCTTATGCATCCCCTTTTACTGTTAAGAAAATGGGAGAGGCTCAGATATCTAGGAATCAACAGGTTACCCAATCTGGAGTTTCCCAGGGAAGGAGGGGGCCTGCTGATGCAGGAGCTAAGCCTGGTGGTAGTAATGTTGCGACTGGTGGTAACTACCAAGGTGGGGATGGAAACAGAGGTTATGGAAGAGGTAGCTGGGGGCGAGGGAATAATCCTGGGATGGGGAATAGGGGGCCGGTTAATCCAATGAGGAATAGGGGCGGTGGGATGGGCGGTAGAGGTATTATGGGCAATGGTGGAAATGGATTTGGACAGGGTATTGGTGCTGCCCCGCCTTTGTTGCATCATCAGTCAATGATGAATCAGGGTTTTGACCCTGCATTTGGTGGTCCAATGGGTAGAATGGGCGGCTATGGAGGCTTTCCTGGGGGTCCGACACCTCCATTCTCTGGGATTTTGCCTTCATTTCCAGGTGTTGGTTTGCCTGGAGTTGCACCTCATGTTAATCCAGCCTTTTTTGGAAGAGGGATGCCTGTGAATGGTATGGGGATGATGCCAACATCAGGTATTGACGGTCCTAATATGGGAATGTGGTCGGATCCAAATATGGGTGGATGGGTTGGTGAAGAGCATGGTGGTGGCAAGGCTGGAGAGTCAAGTTATGGGGAGGAAGCTGCATCAGATCATCAGTATGGTGAGGTGAGCCATGATAGAGCTGGGTGGCCTAATGCTATGAGGGAAAAAGATAGAGGATCGGAAAGGGACTGGTCTGGTTCTTCGGAGCGAAGGTATAGGGATGATAGAGATCAAGGATATGAGAGAGAGGCACCTAGAGAAAAAGATATTGGCCATGACCATGAATGGTCAGAAAGAAGGCATCGAGATGATAGAGAAGTGGGCCGTGAACGATCTCGAGATCATGATCGTGAACGATCTCGTGACCGTGACCGCGAAAAGTCTCGGGATAGAGACCGTGAGCGTGACAGGTACAGGGAAGACAGGGACAGGTATGCAGATCATCATAGGCACAGAGACCGCGAAGCAGAGCACGAGGATGAGTGGGAGAGGGGAAGGTCTTCAAGGACTCACAGTAAATCACGATTATCACAAGAGGAGGAACGCCATTCAAGACCAAGAGATGCTGATTATGGGAAGAGGAGGCGGCTTACCTCGGAATAA 2133 0.512 MDEGEGGYGEGGDPMDQFHRNEAISAVADEGFLAEEDDDYEDLYNDVNVGEGFLQSLRKNDDLGLRNDEVDDKKPQPTQDPGGISIPGVGGNSGAGEGSGTAGGVVESRVPGRVDGVQNQGFRGDEVGVKVGIRVELGHQSGKLSEIEEQGGNDNVGVQGTGQQQHGEVIGSVGNEGLVRQGGGGGGGGGGGGGNLNRAGGNGVGNSVNAVGSVNTGGGGGGGGIGVGAGVGAAVAAGGGAGGGTILFVGDLHWWTTDAELEAELCKYGTVKEVKFFDEKASGKSKGYCQVEFYEPSAATACKEGMNGHQFNGRPCVVAYASPFTVKKMGEAQISRNQQVTQSGVSQGRRGPADAGAKPGGSNVATGGNYQGGDGNRGYGRGSWGRGNNPGMGNRGPVNPMRNRGGGMGGRGIMGNGGNGFGQGIGAAPPLLHHQSMMNQGFDPAFGGPMGRMGGYGGFPGGPTPPFSGILPSFPGVGLPGVAPHVNPAFFGRGMPVNGMGMMPTSGIDGPNMGMWSDPNMGGWVGEEHGGGKAGESSYGEEAASDHQYGEVSHDRAGWPNAMREKDRGSERDWSGSSERRYRDDRDQGYEREAPREKDIGHDHEWSERRHRDDREVGRERSRDHDRERSRDRDREKSRDRDRERDRYREDRDRYADHHRHRDREAEHEDEWERGRSSRTHSKSRLSQEEERHSRPRDADYGKRRRLTSE 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi371g00004 710 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 247 316 IPR000504 GO:0003723
Gabi371g00004 710 CDD RRM_CFIm68_CFIm59 247 320 - -
Gabi371g00004 710 MobiDBLite consensus disorder prediction 174 195 - -
Gabi371g00004 710 SMART rrm1_1 246 319 IPR000504 GO:0003723
Gabi371g00004 710 MobiDBLite consensus disorder prediction 336 375 - -
Gabi371g00004 710 MobiDBLite consensus disorder prediction 55 109 - -
Gabi371g00004 710 MobiDBLite consensus disorder prediction 61 76 - -
Gabi371g00004 710 MobiDBLite consensus disorder prediction 514 710 - -
Gabi371g00004 710 SUPERFAMILY RNA-binding domain, RBD 244 339 IPR035979 GO:0003676
Gabi371g00004 710 Gene3D - 238 330 IPR012677 -
Gabi371g00004 710 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 245 323 IPR000504 GO:0003723
Gabi371g00004 710 MobiDBLite consensus disorder prediction 1 23 - -
Gabi371g00004 710 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 20 638 IPR034772 -
Gabi371g00004 710 MobiDBLite consensus disorder prediction 547 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi371g00004 Gabi-Chr371 51887 60250 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi371g00004 226 321 Eukaryotic Initiation Factors Gene Family AT4G34110 34.000 4.85e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi371g00004 K14398 - gmx:100813748 867.84