Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi371g00003 ATGGCGGACTCGGACAACGATTCCGGCGGGGCGCAGAACGCCGGCGGAGCGAATGCTCATAGCAGAGAGATGTCGCTGCGGGAACAGGACCGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCCCTGCCGGCGAACGCAAAGATCTCGAAGGACGCGAAGGAGACGGTGCAGGAGTGCGTGTCGGAGTTCATCAGCTTCGTCACCGGCGAGGCCTCCGACAAGTGCCAGCGGGAGAAGCGCAAGACCATCAACGGCGACGACCTTCTGTGGGCGATGACCACGCTCGGCTTCGAGGACTACGTCGATCCCCTCAAGGTCTACCTCCAGCGCTTCAGAGAGATGGAAGGGGAGAAGACCATGGTGGCGCGTGACAAGGACGCGCCTCTTGCTCCTGATGCTAACAACAGTCTTTTCGAGAGTGGTAGTTATGGTAGTGCTGGTGGTGGGTTCATGATGCATCAGGGACACGTGTACGGTTCTGGTGGGTTCCATCAAGTGGACATGACTGGTGGTAGTGGCGATGCTTTTATGGTTAAGGATGGGCCTGGTTATCATGGGCCTGGATCTAATGCAGGTAGGCCCAGATAG 600 0.5783 MADSDNDSGGAQNAGGANAHSREMSLREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKVYLQRFREMEGEKTMVARDKDAPLAPDANNSLFESGSYGSAGGGFMMHQGHVYGSGGFHQVDMTGGSGDAFMVKDGPGYHGPGSNAGRPR 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi371g00003 199 FunFam Nuclear transcription factor Y subunit B-3 21 143 - -
Gabi371g00003 199 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gabi371g00003 199 MobiDBLite consensus disorder prediction 1 26 - -
Gabi371g00003 199 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Gabi371g00003 199 SUPERFAMILY Histone-fold 29 131 IPR009072 GO:0046982
Gabi371g00003 199 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Gabi371g00003 199 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Gabi371g00003 199 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Gabi371g00003 199 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 129 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gabi371g00003 199 Gene3D Histone, subunit A 19 143 IPR009072 GO:0046982
Gabi371g00003 199 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi371g00003 Gabi-Chr371 48999 50607 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi371g00003 1 162 CCAAT-HAP3 Transcription Factor Family AT4G14540 70.552 4.16e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gabi371g00003 CBFD_NFYB_HMF 2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi371g00003 K08065 - qsa:O6P43_013552 302.367