Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3714g00003 ATGGCATCACACGGTGTGAATCCTTGTCCCTCTGAAGCCTCTAGCATCTCATCAACTTCCAAAGATGAGAATATGGCCATGAAACTGAGTGAGATTGGTCTCAAGCCTGAACTAGATCAGGCTTCCAGTTCCAAACCCTTGGCGCTGCTAGATCTCTTGAAGCTTTCCAATGGCGATAAGGTTGCTGCTCCTGAACCAAAGGTTGAACTTGATCTGTTCAACCCATCAGGTAATAATGTTGTTGGTTCATCTAATTCTAGGGTTCATGACACTGAAGGCATTGAGGAAAACGAAAACTCAAAGACAGAGGCAAAGAGTTTCTCATGCAACTTTTGCAAGAGAAAATTCTCTACCTCACAAGCTTTGGGAGGGCATCAAAACGCTCATAAAGGAGAGCGTGCCTTTGCAAAACGTTGTCAAACCCTTGGTGTCGGTGCTGGTAGTTTTGATCACTTTCCTTATTACTATTGGAGGATGAAGAGAGAACTGCCACGTTAG 498 0.4438 MASHGVNPCPSEASSISSTSKDENMAMKLSEIGLKPELDQASSSKPLALLDLLKLSNGDKVAAPEPKVELDLFNPSGNNVVGSSNSRVHDTEGIEENENSKTEAKSFSCNFCKRKFSTSQALGGHQNAHKGERAFAKRCQTLGVGAGSFDHFPYYYWRMKRELPR 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3714g00003 165 MobiDBLite consensus disorder prediction 8 25 - -
Gabi3714g00003 165 SUPERFAMILY beta-beta-alpha zinc fingers 103 135 IPR036236 -
Gabi3714g00003 165 Gene3D Classic Zinc Finger 82 143 - -
Gabi3714g00003 165 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 134 IPR013087 -
Gabi3714g00003 165 ProSitePatterns Zinc finger C2H2 type domain signature. 109 129 IPR013087 -
Gabi3714g00003 165 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 160 IPR044246 GO:0009788
Gabi3714g00003 165 MobiDBLite consensus disorder prediction 1 28 - -
Gabi3714g00003 165 MobiDBLite consensus disorder prediction 74 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3714g00003 Gabi-Chr3714 50264 50761 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3714g00003 88 154 C2H2 Transcription Factor Family AT5G25160 53.731 6.20e-18 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3714g00003 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3714g00003 - - lang:109326376 141.739