Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3714g00002 ATGGCATCACACGGTGTGAATCCTTGTCCCTCTGAAGCCTCTAGCATCTCATCAACTTCCAAAGATGAGAATATGGCCATGAAACTGAGTGAGATTGGTCTCAAGCCTGAACTAGATCAGGCTTCCAGTTCCAAACCCTTGGCGCTGCTAGATCTCTTGAAGCTTTCCAATGGCGATAAGGTTGCTGCTCCTGAACCAAATGTTGAACTTGATCTGTTCAAGCCATCAGGTAATAATGTTGTTGGTTCATCTAATTCTAGGGTTCATGACACTGAAGGCATTGAGGAAAACGAAAACTCAAAGACAGAGGCAAAGAGTTTCTCATGCAACTTTTGCAAGAGAAAATTCTCTACCTCACAAGCTTTGGGAGGGCATCAAAACGCTCATAAAGGAGAGCGTGCCTTTGCAAAACGTCGTCAAACCCTTGGTGTTGGTGCTGGTAGTTTTGATCACTTTCCTTATTACCCTTATTCAACACTTTCTAATTTCTATGAAGGATCCTTTAATAATAATGCACTTGGGGTTCGAAGCGACTCCACGATTCACAAGAAGCCTTTCTATCCTTCTTGGTACTCCACTAGTTCCATGTATGGTCACGCTTGGTCAAATCAGGGTCAGAGAATTCTAAACTCTTCAGCACTTGGTGGCTTTGGAATTCTGAGAAGTGGTGCAACTCCAAGTTCAAGGCTAGAGGATGATAATGGTACCGCTAGAAGACTTCCTCTTTCAGCAAATGCTGCTACCATTTCATCAAGCCAAGCAATAAACAAACCAACCCTAACAGCAACCGCTGATCATCATTCTGTGCCAGAAGAAGCCGCCAAAGCTGAATCTTCTGATCTTGATTTGTCACTTAAGCTTTGA 864 0.434 MASHGVNPCPSEASSISSTSKDENMAMKLSEIGLKPELDQASSSKPLALLDLLKLSNGDKVAAPEPNVELDLFKPSGNNVVGSSNSRVHDTEGIEENENSKTEAKSFSCNFCKRKFSTSQALGGHQNAHKGERAFAKRRQTLGVGAGSFDHFPYYPYSTLSNFYEGSFNNNALGVRSDSTIHKKPFYPSWYSTSSMYGHAWSNQGQRILNSSALGGFGILRSGATPSSRLEDDNGTARRLPLSANAATISSSQAINKPTLTATADHHSVPEEAAKAESSDLDLSLKL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3714g00002 287 MobiDBLite consensus disorder prediction 8 25 - -
Gabi3714g00002 287 MobiDBLite consensus disorder prediction 262 287 - -
Gabi3714g00002 287 Gene3D Classic Zinc Finger 83 144 - -
Gabi3714g00002 287 MobiDBLite consensus disorder prediction 81 100 - -
Gabi3714g00002 287 MobiDBLite consensus disorder prediction 268 287 - -
Gabi3714g00002 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 134 IPR013087 -
Gabi3714g00002 287 ProSitePatterns Zinc finger C2H2 type domain signature. 109 129 IPR013087 -
Gabi3714g00002 287 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 287 IPR044246 GO:0009788
Gabi3714g00002 287 MobiDBLite consensus disorder prediction 1 28 - -
Gabi3714g00002 287 SUPERFAMILY beta-beta-alpha zinc fingers 103 135 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3714g00002 Gabi-Chr3714 18831 19694 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3714g00002 88 187 C2H2 Transcription Factor Family AT5G25160 44.554 1.03e-19 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3714g00002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3714g00002 - - lang:109326376 214.157