Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3714g00001 ATGGCATCACACGGTGTGAATCCTTGTCCCTCTGAAGCCTCTAGCATCTCATCAACGTCCAAAGATGAGAATATGGCCACGAAACTGAGTGAGATTGGTCTCAAGCCTGAACTAGATCAGGCTTCCAGTTCCAAACCCTTGGCGCTGCTAGATCTCTTGAAGCTTTCCAATGGTGATAAGGTTGCTGCTCCTGAACCAAAGGTTGAACTTGATCTGTTCAACCCATCAGGTAATAATGTTGTTGGTTCATCTAATTCTAGGGTTCATGACACTGAAGGCATCGAGGAAAAAGAAAACTCAAAGACAGAGGCAAAGAGTTTCTCATGCAACTTTTGCAAGAGAAAATTCTCTACCTCACAAGCTTTGGGAGGGCATCAAAACGCTCATAAAGGAGAGCGTGCCTTTGCAAAACGTCGTCAAACCCTTGGTGTTGGTGCTGGTAGTTTTGATCACTTTCCTTATTACCCTTATTCAACACTTTCTAATTTCTTTGAAGGATCCTTTAATAATAATGCACTTGGGGTTCGAAGGGACTCCACGATTCACAAACCTTTTTATCCTTCTTGGTACTCCACTAGTTCCATGTATGGTCACGCTTGGTCAAATCAGGGTCAGAGAATTCTAAACTCTTCAGCACTTGGTGGCTTTGAAATTTTGAGAAGCGATGCAACTCCAAGTTCAAGGCCAGAGGATGATAATGCTACTGCTAGAAGACTTTCTCTTTCTGCAAATGCTGCTACCAATTCATCAAGGCAAGCAATAAACAAACCAACCCTAACAGCAACCGCTGATCATCATTCTGTGCCAGAAGAAGCCGCCAAAGCTGAATCTTCTGATCTTGATTTGTCACTTAAGCTTTGA 861 0.4309 MASHGVNPCPSEASSISSTSKDENMATKLSEIGLKPELDQASSSKPLALLDLLKLSNGDKVAAPEPKVELDLFNPSGNNVVGSSNSRVHDTEGIEEKENSKTEAKSFSCNFCKRKFSTSQALGGHQNAHKGERAFAKRRQTLGVGAGSFDHFPYYPYSTLSNFFEGSFNNNALGVRRDSTIHKPFYPSWYSTSSMYGHAWSNQGQRILNSSALGGFEILRSDATPSSRPEDDNATARRLSLSANAATNSSRQAINKPTLTATADHHSVPEEAAKAESSDLDLSLKL 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3714g00001 286 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 286 IPR044246 GO:0009788
Gabi3714g00001 286 MobiDBLite consensus disorder prediction 81 100 - -
Gabi3714g00001 286 MobiDBLite consensus disorder prediction 8 26 - -
Gabi3714g00001 286 MobiDBLite consensus disorder prediction 242 262 - -
Gabi3714g00001 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 134 IPR013087 -
Gabi3714g00001 286 ProSitePatterns Zinc finger C2H2 type domain signature. 109 129 IPR013087 -
Gabi3714g00001 286 Gene3D Classic Zinc Finger 82 144 - -
Gabi3714g00001 286 SUPERFAMILY beta-beta-alpha zinc fingers 103 135 IPR036236 -
Gabi3714g00001 286 MobiDBLite consensus disorder prediction 242 286 - -
Gabi3714g00001 286 MobiDBLite consensus disorder prediction 267 286 - -
Gabi3714g00001 286 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3714g00001 Gabi-Chr3714 1932 2792 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3714g00001 88 286 C2H2 Transcription Factor Family AT5G25160 33.663 2.11e-20 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3714g00001 None None None