Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3713g00001 ATGGCCATCGTCCGCCCTCGCCTCAACTTCAATCTCCACCTCAAACTCCCAGAAACCTCTGAGATACGCCCGTGCTTCACTCTTCCCATCCTACCCATCACCACCAAATCTTCCGGCGGTGATGCCATTGCTCTTGATGACGTTGAGAAACTCGCCGTCCTCGGCCACGGCAGCGGCGGCACCGTCTACAAGGTCCGCCACAAAAAGACTTGTGTGATCTACGCCCTCAAGGTCATCCACTGTGAATCCGATGCAGCCGCACGCAGCCGCGTCATCTCTGAGATAAACATCCTCGCTGCCGCCGACTGCCCCTACATTGTCCGGTACCATGGATCCTCCGTGCAACCCTTTGGCGATGTCTCAATCGTAATGGAATACATGGACTCAGGCACGCTCGAAACAGCCCTCAAATCCGGCGGTGCATTCTCCGAACGGCGACTCTCTGCCGTGGCACGTGACGTTCTCAACGGCATCGCGTATATCCACGCGCGCAACGTGGCTCACCGTGACCTGAAGCCCGCAAATATTCTCATGAATTCAAACAATGAGATCAAGATTGCGGATTTCGGAGTCAGCAAGCAGCACGTGTCAGCGTTCACGTGCAATACTTTCGTGGGCACGTGCGCCTACATGAGTCCGGAGCGGCTTAACCCGAATGGTGATGGCGGGAACTATAACGGTTATGCTGCTGATATATGGAGCTTCGGTTTGACCCTCTTTGAACTCTATGTGGGTCACTACCCTTTTCTTCACCCGGGTCAGACACCCACCTGGACCAACCTCATTTTCGCGATTTGCTTCAGTGACCCACCATCCCTGCCGGAGACTGCATCGCCGGAGTTTCGCAGCTTTATGGAGTGTTGCCTCAACAAAGAGTCCGGTGAAAGGTGGACGGCTACTCAGCTCTTGACCCACCCATTTGTATTTGTGTGTCAAGATCCGGAAACTTGTTAA 954 0.544 MAIVRPRLNFNLHLKLPETSEIRPCFTLPILPITTKSSGGDAIALDDVEKLAVLGHGSGGTVYKVRHKKTCVIYALKVIHCESDAAARSRVISEINILAAADCPYIVRYHGSSVQPFGDVSIVMEYMDSGTLETALKSGGAFSERRLSAVARDVLNGIAYIHARNVAHRDLKPANILMNSNNEIKIADFGVSKQHVSAFTCNTFVGTCAYMSPERLNPNGDGGNYNGYAADIWSFGLTLFELYVGHYPFLHPGQTPTWTNLIFAICFSDPPSLPETASPEFRSFMECCLNKESGERWTATQLLTHPFVFVCQDPETC 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3713g00001 317 ProSiteProfiles Protein kinase domain profile. 48 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3713g00001 317 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Gabi3713g00001 317 ProSitePatterns Protein kinases ATP-binding region signature. 54 77 IPR017441 GO:0005524
Gabi3713g00001 317 CDD PKc_MAPKK_plant_like 46 312 - -
Gabi3713g00001 317 Pfam Protein kinase domain 49 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3713g00001 317 Gene3D Transferase(Phosphotransferase) domain 1 124 316 - -
Gabi3713g00001 317 Gene3D Phosphorylase Kinase; domain 1 31 123 - -
Gabi3713g00001 317 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 42 309 - -
Gabi3713g00001 317 FunFam Dual specificity mitogen-activated protein kinase kinase 31 127 - -
Gabi3713g00001 317 SUPERFAMILY Protein kinase-like (PK-like) 44 309 IPR011009 -
Gabi3713g00001 317 SMART serkin_6 48 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3713g00001 Gabi-Chr3713 35589 36542 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3713g00001 1 308 MAP Kinase Kinase Gene Family AT1G73500 51.935 3.18e-106 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Gabi3713g00001 Pkinase 1.9e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3713g00001 K20604 - gmx:100804100 441.425