Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3700g00063 ATGGTCAGAACAGAACTTTCAATGACTAGAACCAACAACATGACCGACACCCTTAGGCATCGCAATCAAAGAGTAAACTATATAGAAATAAGTGATCCTGGAAGTGACTCGTTCAGTTCTGATCCAGAGAATTCAAGGTGCAGCCCTACTAGACTAACAACAAGAAGAAAAACAACCTTATGCAGTCCAAGAGTATTGGAGACAGAAATGATGGACTCAAGTGTGGGTTTCGTTGCAAGAGGTGGACATGGTGATGGACAGGAAGTAGAGCCTATAAGATGGGGCGTAAAGGGTACACAGAGTTGCATTTCCAAAAAGGGGGAGGCAAAGGGAGAGCTAAACAGGGAAAGTGCAGAGGCTATAAAATGGGGCATACTGGGTACACGGAGTTGCTTTTCCAAAAAGAGGGTGGCAAAGGGAGAGCAAAACAAGGAAAGTGTGGAGCCTATAAAATGGGGCATACAGGGTACACGGAGTTGTGTATCCAAAAAGAGGGCGACTAATGGAGAGCAAAAAAAGGAAAGTGTAGAGTCTATAAAGTGGGGCATACAGGGTATACGGAGTTGCATTTCCAAAAAGAGGGCGGTAAAGGGAGAGAAAAACAAGGAAAATAATATTCCGGTACCAAGTTCAATAATGGAAAAAGGTCCATCATCACCTGAAAGACTAGTTGCAAGTATGAAAAAAGATTCACTTGCACCTGTACCAGTAAGGTTGAGTAAAAAAACCATTTTGTCATGGTTGATAGATTATAAGCTAATCGACGAAGATGAACAAGTGTGCTATATGGATGGCACAAAGGAATATGCAGCTTTGAGAGGAAGAATTACTAGAGGTGGAATACTTTGCAGCTGTTGCCAGAGGGAAACATCAGTGTGGACCTTTGAGAAGCATGCTGGAAGTGATCTTAAACAACCATATGAACATATTTATCTCCTCCAGAAAGGCACATGTCTCCAAGACTGCCTGATTGCTGCTTGGCAGGATGCCAGGGAACGAAAACGCCGGTGTCGGTTTTCGTATGTGCTAAAAGGAAGTGTTGCAGACCAAAATGATGATGCTTGTTCAATCTGCGGAGATGGGGGAGAATTAATCTGTTGTGACCAGTGTCCCTCCACATATCATCCATCTTGTATGAATATGGAGAGGGTTCCCCATAACAATTGGTTATGTCCATACTGCATATGCAAATACTGTGGAATTGGCGGGGATAGTAAGGAATTCATCACATGCTCTCAGTGCGACAAGAAGTTTCACTGGGGGTGCTTTAAAGAATTTGAAAAAGAATTCTCAAAAGAAACGCTGGACCTTAACTGTTCAAGATTATATTGTGGGCCAGGTTGCAGAGAGATCTATGAGAAATTGGAAAGCTCACTTGGAACCAGAAATGATGTCTTTGCAAGATACTCTTGGAGAGTTATCCGCCAAATGGATATGACCCCCAAGGTGGTCTCTGCTGCTAGGAACTCACATATAGAAAATAATTCAAAGGTTGCAGCTACTTGGATGTTAATGAATGAAGCTTTTAACACAATAATTGACCGGCACACAGGCATCAATCTGGTTGAAAGTATAGTTTACAGTCGAGGATCAAACTTATCCAGGATTAATTTTAGCCGATTTTATACATTTATCCTGGAGAAAGATGACGAGATCATCGCAGCAGCTTGTGTAAGATTTCATGGTAGGAGGATTGCAGAAATGCCTTTTATTGCCACAGAAGAGGCATACAGGCGCCAAGGAATTTCCCGGGCATTACTGACTGTAATTGAATCGTTCCTGTGCAGTCTTAAAGTTGAAAACTTGATCTTTCCATCTTTTCGGAAGACTACTGAGATGTGGAAGCGCAAGTACGGCTTTAAAGAGATGTGCCAAGAGTTGAAGAGAGACGTATTGTCCTACAATATTTTGATGTTACCTGATGCTTTAAGACTGTACAAAAACTTTACCACAAGCATAGCAGATGGTGACAATAATAGAGACAATCAGAATGACTTGGAACCACAGACAGAGCAGGGAGGGAGACCCCTTTTTGACTTGAATGTTGCCCTTCATGAGGAAGACTATTAG 2070 0.4217 MVRTELSMTRTNNMTDTLRHRNQRVNYIEISDPGSDSFSSDPENSRCSPTRLTTRRKTTLCSPRVLETEMMDSSVGFVARGGHGDGQEVEPIRWGVKGTQSCISKKGEAKGELNRESAEAIKWGILGTRSCFSKKRVAKGEQNKESVEPIKWGIQGTRSCVSKKRATNGEQKKESVESIKWGIQGIRSCISKKRAVKGEKNKENNIPVPSSIMEKGPSSPERLVASMKKDSLAPVPVRLSKKTILSWLIDYKLIDEDEQVCYMDGTKEYAALRGRITRGGILCSCCQRETSVWTFEKHAGSDLKQPYEHIYLLQKGTCLQDCLIAAWQDARERKRRCRFSYVLKGSVADQNDDACSICGDGGELICCDQCPSTYHPSCMNMERVPHNNWLCPYCICKYCGIGGDSKEFITCSQCDKKFHWGCFKEFEKEFSKETLDLNCSRLYCGPGCREIYEKLESSLGTRNDVFARYSWRVIRQMDMTPKVVSAARNSHIENNSKVAATWMLMNEAFNTIIDRHTGINLVESIVYSRGSNLSRINFSRFYTFILEKDDEIIAAACVRFHGRRIAEMPFIATEEAYRRQGISRALLTVIESFLCSLKVENLIFPSFRKTTEMWKRKYGFKEMCQELKRDVLSYNILMLPDALRLYKNFTTSIADGDNNRDNQNDLEPQTEQGGRPLFDLNVALHEEDY 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3700g00063 689 SMART PHD_3 398 449 IPR001965 -
Gabi3700g00063 689 SMART PHD_3 354 395 IPR001965 -
Gabi3700g00063 689 PANTHER PHD FINGER PROTEIN 12 142 665 IPR042163 GO:0003714|GO:0045892
Gabi3700g00063 689 MobiDBLite consensus disorder prediction 1 54 - -
Gabi3700g00063 689 Pfam Acetyltransferase (GNAT) family 540 620 IPR000182 GO:0016747
Gabi3700g00063 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 343 398 IPR013083 -
Gabi3700g00063 689 Pfam Tify domain binding domain 274 325 IPR032308 -
Gabi3700g00063 689 Gene3D - 498 635 - -
Gabi3700g00063 689 SUPERFAMILY FYVE/PHD zinc finger 333 395 IPR011011 -
Gabi3700g00063 689 MobiDBLite consensus disorder prediction 1 21 - -
Gabi3700g00063 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 399 449 IPR013083 -
Gabi3700g00063 689 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 525 624 IPR016181 -
Gabi3700g00063 689 MobiDBLite consensus disorder prediction 28 54 - -
Gabi3700g00063 689 CDD NAT_SF 544 603 - -
Gabi3700g00063 689 ProSiteProfiles Zinc finger PHD-type profile. 352 397 IPR019787 -
Gabi3700g00063 689 SUPERFAMILY FYVE/PHD zinc finger 395 430 IPR011011 -
Gabi3700g00063 689 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 503 650 IPR000182 GO:0016747
Gabi3700g00063 689 Pfam PHD-finger 355 397 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3700g00063 Gabi-Chr3700 556395 562621 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3700g00063 241 640 PHD Transcription Factor Family AT4G14920 40.394 1.65e-99 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi3700g00063 Acetyltransf_1 0.00028 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3700g00063 - - lang:109331897 646.736