Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3700g00060 ATGGCTAGAACCAAAAAAAAGACCTACTCACTTAGGAATCATGATGAAAAAGTAAGCTACCGAGAATTAAGCGATCCTGAAGGTGACTCATTAAGTTCTGATTCAGATAATTCAAGGTCCAGTCCTTCTAGACCATCAACAAGAAGAAAAACAACATTATGCAGTTCAAGAGAATTGGAGACAGAAATGGTAAAAAGTGTGGATTTATTTGCAAGAGGTGGACGGGGCCATGGACAAGGTGTTAAAACAAGATTGAGTTCCCAAAATGCAATTGAGACCGAAATAGCGGACTCAAGTGTGGATTTCGATGCAGGACGTCTACAAGGTCGTGGACGAGGTGGAAGGGGTCGTGGACGTGGTGGTGGACGAGGTGGAGGGGGTGGACAGGGTACACGGAGTTGCCTTTCTCAGAAGACGGCAACAAATGTAGAACAAAAAAAGGAAAGTAGTCATCCTGGACCCAGTTCAATAATGGAAAAAGGTCCATCATCACCGGCCACATCCATGAAAAGAGATTCACCTCAACCCAAACGGTCATGTAGAAAAACCATTTTGTCATGGTTGATAGATTGTCAACTTATTGATGAAGATGAGGAAGTATGCTATATGGGTTGCACAAAGGAAAGTGCACTTATGACAGGAAGAATTACCAGGGGTAGAATTCTCTGCAGCTGTTGCCAGAGGGAAACATCTGTGTGGACCTTTGAAAAGCATGCTGGAAGTAATCTAGGACAACCTTACCAGCATATTTACCTCCTTAGCAAAGGTACATCCCTCCAGGACTGCCAGATTGCTGCTTGGGAAGATGCCAACGAACGAAAACGCCGCTGTATCTATTCATATGTGCCAAAAGAAACTGTTGCAGACCACGATGATGATGCTTGTTCAATTTGCGGAAATGGGGGAGACTTAATATGTTGTGACAAGTGTCCCTCCGTATATCATCCATTGTGTATGAATATGGAGAGAGTTCCCCGGAGGGATTGGTTATGTCCATATTGCATATGCAAATACTGTGGGCTTGGTGGAGAGATTAAGGAATTCATCACTTGCTCTCAATGCGACAAAAAGTTTCATTGGGGATGCTTTAAAGAATTTGAAAAAGAATTCTCGAAAGCAACCCTAGACCTTAACTGTTCAAGATTATATTGTGGGCCTGGTTGCAGAGAGATCTATGAGAAAATGGAAGGCTCACTTGGAATAAAAAATGATGTCTTTGCGAGCTACTCTTGGAGAGTTATCCGCCACATGGATATGAACCCCAAGGTGGCTTCTGCTTCTAGGAACCTGCATTTAGAAAATAATTCTAAGGTTGCAGTTACTTGGATGTTAATGAAGGAAGCTGTTAAAACAATAACTGACCGACACACGGGCATCAATGTGGTTCAAAGTGTAGTTTACAGTTGTGGATCAAACTTAACCAGGATTAATTTTAGCCGTTTTTATACATTTGTCCTGGAGAAAGATGACGAGATCATCGCTGCAGCTTCTATTAGATTTCATGGGAGGAGGATTGCAGAAATGCCTTTTATTGCCATAGAAGAGGCATACAGGGGCCAAGGAATTTGTCAGGAATTAATGAGGGTAATTGAATCGTTCCTATGCAATCTTAAAGTTGAATACTTGATCATTCCATCTGCTCCGGAGACTTCTGGGATGTGGAAGTGCAAGTTCAACTTCAAAGAGGTCAGCAAAGAGTTGATGAAAGAAATATCATCCAATAATATTTTGATGGTGGCGGATGCTTTAAGACTTTACAAGGACTTATCATCAACAAGAATAGCAGACAATCAAACTGACAGTCAGAATAGGCCGGATCCACAGACGGAGCATGTGGATAGAACACCGGAACAACAAATGGAGCGGACAGAGAGACCGCTCCTAGATTTGAATGTCTCCCCTGATCGGGAAGATAAGTAG 1920 0.4245 MARTKKKTYSLRNHDEKVSYRELSDPEGDSLSSDSDNSRSSPSRPSTRRKTTLCSSRELETEMVKSVDLFARGGRGHGQGVKTRLSSQNAIETEIADSSVDFDAGRLQGRGRGGRGRGRGGGRGGGGGQGTRSCLSQKTATNVEQKKESSHPGPSSIMEKGPSSPATSMKRDSPQPKRSCRKTILSWLIDCQLIDEDEEVCYMGCTKESALMTGRITRGRILCSCCQRETSVWTFEKHAGSNLGQPYQHIYLLSKGTSLQDCQIAAWEDANERKRRCIYSYVPKETVADHDDDACSICGNGGDLICCDKCPSVYHPLCMNMERVPRRDWLCPYCICKYCGLGGEIKEFITCSQCDKKFHWGCFKEFEKEFSKATLDLNCSRLYCGPGCREIYEKMEGSLGIKNDVFASYSWRVIRHMDMNPKVASASRNLHLENNSKVAVTWMLMKEAVKTITDRHTGINVVQSVVYSCGSNLTRINFSRFYTFVLEKDDEIIAAASIRFHGRRIAEMPFIAIEEAYRGQGICQELMRVIESFLCNLKVEYLIIPSAPETSGMWKCKFNFKEVSKELMKEISSNNILMVADALRLYKDLSSTRIADNQTDSQNRPDPQTEHVDRTPEQQMERTERPLLDLNVSPDREDK 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3700g00060 639 PANTHER PHD FINGER PROTEIN 12 65 612 IPR042163 GO:0003714|GO:0045892
Gabi3700g00060 639 MobiDBLite consensus disorder prediction 8 28 - -
Gabi3700g00060 639 MobiDBLite consensus disorder prediction 101 178 - -
Gabi3700g00060 639 MobiDBLite consensus disorder prediction 594 639 - -
Gabi3700g00060 639 CDD NAT_SF 484 544 - -
Gabi3700g00060 639 MobiDBLite consensus disorder prediction 606 639 - -
Gabi3700g00060 639 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 443 590 IPR000182 GO:0016747
Gabi3700g00060 639 ProSiteProfiles Zinc finger PHD-type profile. 292 337 IPR019787 -
Gabi3700g00060 639 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 347 IPR013083 -
Gabi3700g00060 639 Pfam PHD-finger 295 337 IPR019787 -
Gabi3700g00060 639 MobiDBLite consensus disorder prediction 130 173 - -
Gabi3700g00060 639 Pfam Tify domain binding domain 214 265 IPR032308 -
Gabi3700g00060 639 Pfam Acetyltransferase (GNAT) family 482 534 IPR000182 GO:0016747
Gabi3700g00060 639 SMART PHD_3 294 335 IPR001965 -
Gabi3700g00060 639 SMART PHD_3 336 389 IPR001965 -
Gabi3700g00060 639 MobiDBLite consensus disorder prediction 1 57 - -
Gabi3700g00060 639 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 477 549 IPR016181 -
Gabi3700g00060 639 Gene3D - 470 580 - -
Gabi3700g00060 639 SUPERFAMILY FYVE/PHD zinc finger 270 335 IPR011011 -
Gabi3700g00060 639 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3700g00060 Gabi-Chr3700 539525 545204 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3700g00060 181 633 PHD Transcription Factor Family AT4G14920 39.262 4.83e-106 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi3700g00060 Acetyltransf_1 9.5e-05 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3700g00060 - - pvu:PHAVU_009G190800g 611.683