Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3700g00056 ATGGCGAACCCAGTTGAAGTTTCAGCTCTGAATCGCATCAAGTTGCATCTTTTAGGTGAACTCTCACCGCTGGGTACTTCAGAGTTTGCCCAAAACAAAAAACCATGGTTCGAATTAGACGAAGCAAACCCTAGCCCCTCTCAATCTGAGTCACTCTCTTCCTCTTCTGACTCTTCCATCTCTTTGAATCATTATTTCTCTGATCTCCTCGAAACGGAAACTCAGATTCCCCTCTTCGAATTTGAGTCCAAACCCCAAGTAATCGACATCGAAACCCCTAAAACAGTAACATCGAGTCCCACACCAAATCAAACCGTCGAGAAGAAACCTCAACTGAATCGGAAACCGTCGCTGCAAATCTCTCTCCCGAAGAAAACCGAGTGGATCCGATTCGGAAACCCGGATCCGAATCCCGAGGCTCCGGAGGTAATCGTGCAGAACCAACCGGATCCCGTTGAGAAGAAGCACTACAGAGGGGTCCGACAGAGGCCGTGGGGAAAGTTCGCAGCTGAGATCCGTGACCCGAACAAGCGCGGGTCAAGGGTGTGGCTTGGAACGTTCGACACCGCCATCGAAGCCGCCAAAGCCTACGACCGAGCCGCGTTCAAGCTTCGCGGCTCCAAAGCTATCCTCAACTTCCCTCTGGAAGTTGGCGCTGCGGCGGCGGAGGTGGTGCCTTCCAACGACGGCGAGAGAAAACGTCGCCGTGAAGAGGAGGAGCAGGTGGAAGTGACGCCGGTGGTTAAAAAGGAGAAAACGACGGAATCAGACGTGAACTGTAATAGGGAGATTCCGTTAACGCCGTCTATTTGGACCGGGTTTTGGGACAGTGATGCTCAGGGGATTTTCACCGTACCGCCGTTATCTCCCCTTCCCGCTTTAGGTTATTCGCAGCTTATGGTTGTGTGA 909 0.5226 MANPVEVSALNRIKLHLLGELSPLGTSEFAQNKKPWFELDEANPSPSQSESLSSSSDSSISLNHYFSDLLETETQIPLFEFESKPQVIDIETPKTVTSSPTPNQTVEKKPQLNRKPSLQISLPKKTEWIRFGNPDPNPEAPEVIVQNQPDPVEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFPLEVGAAAAEVVPSNDGERKRRREEEEQVEVTPVVKKEKTTESDVNCNREIPLTPSIWTGFWDSDAQGIFTVPPLSPLPALGYSQLMVV 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3700g00056 302 PANTHER DNA-BINDING DOMAIN 108 238 IPR044808 GO:0003700|GO:0009873
Gabi3700g00056 302 MobiDBLite consensus disorder prediction 42 58 - -
Gabi3700g00056 302 SMART rav1_2 156 220 IPR001471 GO:0003700|GO:0006355
Gabi3700g00056 302 MobiDBLite consensus disorder prediction 227 250 - -
Gabi3700g00056 302 PRINTS Ethylene responsive element binding protein signature 196 216 IPR001471 GO:0003700|GO:0006355
Gabi3700g00056 302 PRINTS Ethylene responsive element binding protein signature 157 168 IPR001471 GO:0003700|GO:0006355
Gabi3700g00056 302 MobiDBLite consensus disorder prediction 93 113 - -
Gabi3700g00056 302 CDD AP2 155 214 IPR001471 GO:0003700|GO:0006355
Gabi3700g00056 302 SUPERFAMILY DNA-binding domain 156 216 IPR016177 GO:0003677
Gabi3700g00056 302 ProSiteProfiles AP2/ERF domain profile. 156 214 IPR001471 GO:0003700|GO:0006355
Gabi3700g00056 302 Pfam AP2 domain 156 206 IPR001471 GO:0003700|GO:0006355
Gabi3700g00056 302 FunFam Ethylene-responsive transcription factor 2 155 216 - -
Gabi3700g00056 302 Gene3D AP2/ERF domain 155 216 IPR036955 GO:0003700|GO:0006355
Gabi3700g00056 302 MobiDBLite consensus disorder prediction 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3700g00056 Gabi-Chr3700 457767 459095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3700g00056 1 302 AP2-EREBP Transcription Factor Family AT5G47230 45.872 8.96e-70 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gabi3700g00056 AP2 3.7e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3700g00056 K09286 - gmx:100800453 347.051