Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3700g00047 ATGATGCTTGAAAAGGAAGATTTGGGTTTGAGTCTAAGCCTCAACTTCCCTCAGAATACCCCAAATCCCGTGCATCTGAATCTCATGTCCTCTTCTCCTTCTCTTTGTAATCCTCATAAAACCTCTTGGAACGACGCTTTCACTTCCTCGGATCGAAACTCCGAAACATGCAGAGGAGAAGCTAGATCTTTTCTCCGCGGAATCGACGTGAATAGGTTGCCATCTCCGGTTGACTGCGAAGAGGAAGCAGGCGTTTCGTCACCCAACAGCACCGTTTCGAGCGTGAGTGGAAAACGAAGCGAGAGAGAGATCAACGGCGCAGATCATGACGCGGACAGAGCCTGTTCCCAAGGTATCAGTGATGAAGAAGACGGTGAAACCTCAAGGAAAAAGCTTAGGCTTTCTAAAGATCAATCAGCTATTCTCGAAGAGAGCTTCAAAGAACACAATACCCTTAACCCCAAACAAAAGTTGGCACTGGCAAAACAACTAGGCCTTCGACCAAGACAAGTAGAGGTCTGGTTCCAGAACAGAAGGGCTAGGACGAAGCTGAAGCAAACTGAAGTGGACTGTGAGGTGTTGAAAAGGTGCTGTGAGAATCTGACGGAGGAAAACAGGAGGTTGCAAAAGGAAGTTCAGGAGCTTAGAGCACTGAAACTTTCCCCTCAATTTTACATGCAAATGACGCCACCCACAACCCTCACTATGTGCCCATCTTGTGAGCGTGTGGCTGTTCCTTCCTCTGCTGCTGTTGATACTGCCACCCGTCATCATTCCATGGCCCAAGCCCATCCTCGGCCTATGTCCATTAGCCCATGGGCTTCTACAGCTCCCATCCCGCACCGGCCGTTTGATGCCTTCCGTCACTGA 870 0.4943 MMLEKEDLGLSLSLNFPQNTPNPVHLNLMSSSPSLCNPHKTSWNDAFTSSDRNSETCRGEARSFLRGIDVNRLPSPVDCEEEAGVSSPNSTVSSVSGKRSEREINGADHDADRACSQGISDEEDGETSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSAAVDTATRHHSMAQAHPRPMSISPWASTAPIPHRPFDAFRH 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3700g00047 289 MobiDBLite consensus disorder prediction 251 275 - -
Gabi3700g00047 289 ProSitePatterns 'Homeobox' domain signature. 160 183 IPR017970 GO:0000981|GO:0006355
Gabi3700g00047 289 MobiDBLite consensus disorder prediction 101 132 - -
Gabi3700g00047 289 SMART halz 185 228 IPR003106 GO:0006355|GO:0043565
Gabi3700g00047 289 Pfam HD-ZIP protein N terminus 2 103 IPR006712 GO:0005634
Gabi3700g00047 289 PRINTS Lambda-repressor HTH signature 156 165 IPR000047 GO:0003677
Gabi3700g00047 289 PRINTS Lambda-repressor HTH signature 165 181 IPR000047 GO:0003677
Gabi3700g00047 289 MobiDBLite consensus disorder prediction 78 132 - -
Gabi3700g00047 289 CDD homeodomain 129 186 IPR001356 GO:0003677
Gabi3700g00047 289 Pfam Homeodomain 129 183 IPR001356 GO:0003677
Gabi3700g00047 289 SMART HOX_1 127 189 IPR001356 GO:0003677
Gabi3700g00047 289 Pfam Homeobox associated leucine zipper 185 219 IPR003106 GO:0006355|GO:0043565
Gabi3700g00047 289 Coils Coil 184 221 - -
Gabi3700g00047 289 ProSiteProfiles 'Homeobox' domain profile. 125 185 IPR001356 GO:0003677
Gabi3700g00047 289 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 31 261 - -
Gabi3700g00047 289 MobiDBLite consensus disorder prediction 84 100 - -
Gabi3700g00047 289 FunFam Homeobox-leucine zipper protein 18 113 190 - -
Gabi3700g00047 289 SUPERFAMILY Homeodomain-like 115 186 IPR009057 -
Gabi3700g00047 289 Gene3D - 133 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3700g00047 Gabi-Chr3700 383669 385610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3700g00047 1 288 Homeobox Transcription Factor Family AT5G47370 62.046 9.91e-113 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi3700g00047 HD-ZIP_N 3.9e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3700g00047 K09338 - gmx:100813367 471.47