Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3700g00040 ATGACCCGGCGTTGCTCGCATTGCAGCCACAATGGCCACAACTCTAGGACCTGCCCCAACCGGGGGGTCAAGCTTTTCGGAGTCCGATTAACCGACGGGTCGATCCGAAAGAGCGCTAGTATGGGCAATCTCACTCACTATGCTGGCTCCGGGTCCGGACCCCTCCATGCCGGGTCCAATAACCCGAGTTCTCCCGGTGAAACTCCTGATCACGCCGCCGCCGCCGCCGACGGTTACGCCTCCGAGGATTTTGTTCCTGGCTCTTCTTCTAGTTCCCGTGAAAGAAAAAAGGGAGTTCCATGGACTGAGGAGGAACATAGAATGTTTTTACTTGGATTGCAGAAGCTGGGCAAAGGTGATTGGCGTGGAATTGCAAGGAATTATGTTATATCAAGGACACCTACTCAAGTGGCCAGTCATGCTCAGAAATATTTCATCAGGCAAAGCAATGTGTCTAGGCGGAAAAGACGGTCCAGCTTGTTTGATATTATTGCAGATGAAGAAGCTGACACTCCAATGGTACAGCAAGACTTCTTATCAGCTAATCAGCAGCTACAAGTTGAAACAGAAGGCAATAACTCATTGCCGGCTCCTCCACCCCTTGATGAAGAGTGTGAATCCATGGATTCCGCTAACTCAAATGATGGAGATTCTGCACCATTAAAGCCTGACAACACACAATCTTCATACCCCTTACTATATCCTGCATACTATTCTCCATTCTTCCCTTTCCCTCTACCCTATTGGTCAGGATACAGTCCAGAGCCCACCAAGAAGGAAACACATGTAGTGCTGAAGCCAACTGCTGTACATTCTAAAAACCCAATCAATGTCGATGAACTGGTTGGCATGTCAAAACTGAGTTTAGGAGAGACTATTGGTGACTCTGGCCCCTCCTCTTTGTCTCTAAAACTTCTTGAAGAAGGACCCTCAAGACAGTCAGCTTTTCATGCAACTCCAGCATGTGGCAGTTCAGATATGAATGGCAGTGCCATCCATGCAGTTTAA 1008 0.4841 MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLTHYAGSGSGPLHAGSNNPSSPGETPDHAAAAADGYASEDFVPGSSSSSRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIIADEEADTPMVQQDFLSANQQLQVETEGNNSLPAPPPLDEECESMDSANSNDGDSAPLKPDNTQSSYPLLYPAYYSPFFPFPLPYWSGYSPEPTKKETHVVLKPTAVHSKNPINVDELVGMSKLSLGETIGDSGPSSLSLKLLEEGPSRQSAFHATPACGSSDMNGSAIHAV 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3700g00040 335 SMART sant 97 147 IPR001005 -
Gabi3700g00040 335 FunFam transcription factor MYB1R1 99 150 - -
Gabi3700g00040 335 MobiDBLite consensus disorder prediction 211 226 - -
Gabi3700g00040 335 SUPERFAMILY Homeodomain-like 95 150 IPR009057 -
Gabi3700g00040 335 Gene3D - 99 151 - -
Gabi3700g00040 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 149 IPR017930 -
Gabi3700g00040 335 NCBIfam myb-like DNA-binding domain, SHAQKYF class 96 148 IPR006447 GO:0003677
Gabi3700g00040 335 MobiDBLite consensus disorder prediction 1 21 - -
Gabi3700g00040 335 ProSiteProfiles SANT domain profile. 101 149 IPR017884 -
Gabi3700g00040 335 PANTHER TRANSCRIPTION FACTOR KUA1 3 273 - -
Gabi3700g00040 335 MobiDBLite consensus disorder prediction 45 102 - -
Gabi3700g00040 335 Pfam Myb-like DNA-binding domain 100 145 IPR001005 -
Gabi3700g00040 335 CDD SANT 100 145 IPR001005 -
Gabi3700g00040 335 MobiDBLite consensus disorder prediction 186 226 - -
Gabi3700g00040 335 ProSiteProfiles Myb-like domain profile. 93 145 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3700g00040 Gabi-Chr3700 275361 279172 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi3700g00040 Myb_DNA-binding 1.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3700g00040 - - ccaj:109807943 595.89